Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_D01
(1142 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 38 0.013
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 31 2.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 2.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 2.0
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 31 2.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 2.0
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 2.7
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 8.1
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 8.1
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 37.9 bits (84), Expect = 0.013
Identities = 32/106 (30%), Positives = 33/106 (31%), Gaps = 6/106 (5%)
Frame = +1
Query: 445 PXPQKNXPXPXGPPFXKKXFLXFGFSKXGXAPXPFX------SXXXKXXFXPXXXPPPGK 606
P P GPP F G G P PF S F P PP G
Sbjct: 454 PFNPSGAPPSGGPP---GPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG- 509
Query: 607 NPPGXXXFXQXPPGGXXLXGXXGHXPXXGEXPPLFXKIFGXPQKXG 744
PPG PP G P E P F IFG P+ G
Sbjct: 510 GPPGPFDPSGAPPSGMPPVPLPTDLPIPSESPSFFQWIFGRPKPSG 555
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 30.7 bits (66), Expect = 2.0
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Frame = +3
Query: 582 AXXPP---PGXKPPXGXXXXPXXPGGXXSXW--ALXAXPXXGGXPP 704
A PP PG PP G P PGG + + P GG PP
Sbjct: 779 APMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPP 824
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 2.0
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = +3
Query: 591 PPPGXKPPXGXXXXPXXPGGXXSXWALXAXPXXGGXPPPFXKNFWVXTKXGXXPP 755
PPPG P G P PGG P GG PPP G PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGG--------LPPITGGPPPPPPPGGLPPISGGPPPP 761
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 2.0
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = +3
Query: 591 PPPGXKPPXGXXXXPXXPGGXXSXWALXAXPXXGGXPPPFXKNFWVXTKXGXXPP 755
PPPG P G P PGG P GG PPP G PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGG--------LPPITGGPPPPPPPGGLPPISGGPPPP 761
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 30.7 bits (66), Expect = 2.0
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Frame = +3
Query: 582 AXXPP---PGXKPPXGXXXXPXXPGGXXSXW--ALXAXPXXGGXPP 704
A PP PG PP G P PGG + + P GG PP
Sbjct: 779 APMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPP 824
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 2.0
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = +3
Query: 591 PPPGXKPPXGXXXXPXXPGGXXSXWALXAXPXXGGXPPPFXKNFWVXTKXGXXPP 755
PPPG P G P PGG P GG PPP G PP
Sbjct: 298 PPPGLPPITGGPPPPPPPGG--------LPPITGGPPPPPPPGGLPPISGGPPPP 344
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.3 bits (65), Expect = 2.7
Identities = 17/63 (26%), Positives = 18/63 (28%)
Frame = +2
Query: 593 PPRXKTPXGXXXXPXXPRGGALXXGXXGTPXXXGXPPPFXKKFLGXHKKXGXXPXXF*XT 772
PPR P P P G L P PPP + G P
Sbjct: 530 PPRPAPPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGP 589
Query: 773 PPP 781
PPP
Sbjct: 590 PPP 592
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.7 bits (61), Expect = 8.1
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 590 PPPRXKTPXGXXXXPXXPRGGALXXGXXGTPXXXGXPPPFXKKF 721
PPP P P GG++ G P G PPPF + F
Sbjct: 101 PPPGMPGGVPPQAQPFNPHGGSMFGG----PGGPGGPPPFGQPF 140
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.7 bits (61), Expect = 8.1
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 590 PPPRXKTPXGXXXXPXXPRGGALXXGXXGTPXXXGXPPPFXKKF 721
PPP P P GG++ G P G PPPF + F
Sbjct: 381 PPPGMPGGVPPQAQPFNPHGGSMFGG----PGGPGGPPPFGQPF 420
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,859,100
Number of Sequences: 27780
Number of extensions: 313883
Number of successful extensions: 880
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3099034026
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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