Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_C23
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    31   0.15 
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   5.6  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   5.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   7.4  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    25   9.8  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   9.8  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.8  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   9.8  

>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 244 SVMCSNPSRLLQTQPGDVTRGYSDDL-PPTDETELTYEVPLRDE 116
           S + S    L   QP +V + + DDL PP  + ++T +VP+ DE
Sbjct: 93  SSLPSEKPYLSSNQPTNVYKQHQDDLAPPEADNQITRDVPISDE 136


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -1

Query: 704 CXERCVNSHCSSPNTCTCFKDYERNDTNSNVCYK 603
           C E C N+ C    TC   K    +D     CY+
Sbjct: 331 CGEDCENNPCCDGKTCKLTKGSLCDDQQDACCYQ 364


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 215 QPARVAAHDAVVAGACLVFFDLF 283
           Q   V A D  +   C VFFD+F
Sbjct: 782 QDGNVTARDTTMTFTCFVFFDMF 804


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 255 PATT--ASCAATLAGCCRPSPVTSRGATPTTSRRQTKPNSLTKSPYETRAT 109
           P++T  +S  +T A     +P+TS  +T TTS   T P S   S   T AT
Sbjct: 287 PSSTPLSSANSTTATSASSTPLTSVNSTTTTSASST-PLSSVSSANSTTAT 336


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 282 KRSKKTKQAPATTASCAATLAGCCRPSPVTSRGATPTTS 166
           K SKK   +P + AS  ATL+     S V S  + P TS
Sbjct: 194 KASKKLTSSPTSVASKKATLSSV---SKVASTSSLPVTS 229


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 267 TKQAPATTASCAATLAGCCRPSPVTSRGATPTTSRRQTKPNSLTKS 130
           +K A  T +S AA+      P+  TS   TPT+S+      SL +S
Sbjct: 175 SKSASLTASSAAASPTVSFSPAS-TSENLTPTSSKSLASNTSLVQS 219


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 698 ERCVNSHCSSPNTCTCFKDYERNDTNSNVCYK 603
           ER +   CS P    C ++Y R +     CYK
Sbjct: 283 ERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYK 314


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 276 SKKTKQAPATTASCAATLAGCCRPSPVTSRGATPTTSRRQTKPNSLT 136
           S      P TT +C  + +     +P+TS  +T ++S  Q   NS T
Sbjct: 578 STPVTSTPVTTTNCTTSTSVLYTSTPITSPNST-SSSSTQVSWNSTT 623


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = -3

Query: 210 RPSPVTSRGATPTT----SRRQTKPNSLTKSPYETRATEPILMWNQQ 82
           R SPV+SR  +PT     +R QT  +S + S Y +  T P L ++++
Sbjct: 197 RASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKK 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,270
Number of Sequences: 5004
Number of extensions: 55654
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)