Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_C23
(818 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0080 - 8907628-8908182 33 0.36
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 31 0.83
07_03_1705 + 28848293-28848321,28848766-28848841,28848940-288490... 30 1.9
01_03_0017 + 11677029-11677100,11677992-11678030,11678169-116783... 30 2.5
04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741... 29 3.4
01_01_0491 + 3629025-3629051,3629679-3629778,3629947-3630015,363... 29 4.4
04_04_1523 - 34148407-34150224 29 5.9
12_01_0294 + 2230539-2230870,2232179-2232574,2232676-2232834,223... 28 7.8
08_02_1138 + 24631919-24632248,24634100-24634502,24634788-246349... 28 7.8
05_06_0269 - 26818182-26820266 28 7.8
05_01_0259 + 1990180-1990428,1990768-1991526 28 7.8
01_06_0188 - 27310814-27311138,27311197-27311547,27311682-273116... 28 7.8
>10_05_0080 - 8907628-8908182
Length = 184
Score = 32.7 bits (71), Expect = 0.36
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -3
Query: 243 ASCAATLAGCCRPSPVTSRGATPTTSRRQTKP--NSLTKSP 127
A+ AGC RPSP +SR + P+ + + +P SL +SP
Sbjct: 41 AAPTGCFAGCFRPSPTSSRSSPPSCNSQADRPASPSLIRSP 81
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 285 KKRSKKTKQAPATTASCAATLAGCCRPSPVTSRGATPTTSRR 160
K+ +K K+ A +S AA A P PV TP+ S+R
Sbjct: 18 KQMQEKEKEKAAAASSSAAAAAKATNPKPVVVAANTPSASKR 59
>07_03_1705 +
28848293-28848321,28848766-28848841,28848940-28849082,
28849297-28849383,28849492-28849575,28850224-28850380,
28850521-28850606,28850995-28851226,28851351-28851471,
28851610-28851746,28852086-28852202,28852612-28852660,
28852751-28852793,28852945-28853116,28853192-28853262,
28853365-28853458,28853608-28853820,28853851-28853859,
28853895-28853999,28854266-28854586,28854664-28854789
Length = 823
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 270 KTKQAPATTASCAATLAGCCRPSPVTSRGAT 178
KT +AP TT++ A C SP+T RG T
Sbjct: 708 KTSEAPKTTSNGGEVGADVCDASPLTRRGQT 738
>01_03_0017 +
11677029-11677100,11677992-11678030,11678169-11678341,
11679068-11679284,11679518-11679688,11679781-11679941,
11680025-11681069,11681320-11681466,11681547-11681774,
11681863-11682020,11682124-11682493
Length = 926
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 185 GLLRRPPADRRNRTHLRSPPTRRELLNQS 99
G+ RRPPA RR + H R P + +LN S
Sbjct: 417 GVPRRPPAGRRVKDHERYPKVVQLMLNNS 445
>04_03_0618 -
18071612-18072795,18073007-18073072,18074101-18074175,
18074234-18074963
Length = 684
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 656 TCFKDYERNDTNSNVCYKKCDGACENGR 573
T FK Y + N+ V KKC G EN R
Sbjct: 376 TVFKGYNLDQVNNPVAIKKCKGFDENSR 403
>01_01_0491 +
3629025-3629051,3629679-3629778,3629947-3630015,
3630282-3630559
Length = 157
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 698 ERCVNSHCSSPNTCTCFKDYER 633
ERC++S S C CFK +R
Sbjct: 17 ERCISSQAESDGYCACFKGLQR 38
>04_04_1523 - 34148407-34150224
Length = 605
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 689 VNSHCSSPNTCTCFKDYERNDTNSNVCYKKCDGAC 585
+N CS+P C KD+E D + V C +C
Sbjct: 97 INRSCSTPCLCPVSKDFEHKDRSGLVEMLGCSISC 131
>12_01_0294 +
2230539-2230870,2232179-2232574,2232676-2232834,
2233109-2233505
Length = 427
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -2
Query: 553 ASATPGYILSNGTCIRNNTACSANCSAGGEECGLGSG 443
A A P +LS G I A GGEEC L G
Sbjct: 26 ALAAPKKLLSGGVSIEEPRGGGAGGGGGGEECDLFDG 62
>08_02_1138 +
24631919-24632248,24634100-24634502,24634788-24634982,
24635384-24635838,24636119-24636349,24636891-24637123,
24637899-24637971
Length = 639
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = -2
Query: 241 VMCSNPSRLLQTQPGDVTRGYSDDLPPTDETELTYEVPLRDE 116
VM N T P GYS LPPTD E P RD+
Sbjct: 474 VMSGNKEAFEATSP---RHGYSSLLPPTDRNETDRRRPDRDD 512
>05_06_0269 - 26818182-26820266
Length = 694
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 241 VMCSNPSRLLQTQPGDVTRGYSDDLPPTDETELTYEVPLRDES 113
+M + +L ++ + D+ PP+DE++LT E+ R +S
Sbjct: 523 LMSGTRANILSNTCKELRSMFEDEKPPSDESDLTREIHRRAQS 565
>05_01_0259 + 1990180-1990428,1990768-1991526
Length = 335
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = -3
Query: 255 PATTASCAATLAGCCRPSPVTSRGATPTTSRRQTKPNSLTKSPYETRATEPILMWNQQ 82
P A+ AA L C P P + G ++ + T PN L+ ++ A ++ + Q
Sbjct: 222 PTMNATFAAALKKLC-PPPASGGGGRAVSNNQVTDPNVLSNQYFKNVAAGEVMFTSDQ 278
>01_06_0188 -
27310814-27311138,27311197-27311547,27311682-27311693,
27313598-27313662,27314945-27314968
Length = 258
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/69 (31%), Positives = 26/69 (37%)
Frame = +2
Query: 551 RTLRPKSTGHFRKLHRISCNKRSNSYRYARSL*STCTY*GMNSESSRSAXNRPAGRRKDP 730
R LR K GH+RK R S S R+ R Y G + S R G +
Sbjct: 156 RDLRKKLFGHYRKPQRGRSRSPSPSPRHRRERHDRDDYRGRDDYS--GGGGRRGGSSRHE 213
Query: 731 RDSTGSHRR 757
R G RR
Sbjct: 214 RHDDGGRRR 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,880,056
Number of Sequences: 37544
Number of extensions: 441475
Number of successful extensions: 1797
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1795
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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