Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_C20
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   113   3e-26
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   109   5e-25
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    30   0.34 
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    30   0.45 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.8  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.6  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   5.6  
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    25   9.7  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  113 bits (272), Expect = 3e-26
 Identities = 54/78 (69%), Positives = 61/78 (78%)
 Frame = -3

Query: 593 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNAKSSHSIGLMWWLLAREVLRLRGVL 414
           D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L
Sbjct: 132 DAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTL 191

Query: 413 PRDQRWDVVVDLFFYRDP 360
            R   WDV+ DL+FYRDP
Sbjct: 192 SRSAPWDVMPDLYFYRDP 209


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  109 bits (262), Expect = 5e-25
 Identities = 52/78 (66%), Positives = 60/78 (76%)
 Frame = -3

Query: 593 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNAKSSHSIGLMWWLLAREVLRLRGVL 414
           D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG +
Sbjct: 133 DAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNI 192

Query: 413 PRDQRWDVVVDLFFYRDP 360
            R   W+V+ DL+FYRDP
Sbjct: 193 SRTTAWEVMPDLYFYRDP 210


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 575 EASYVNIPVIALCNTDSPLRFVDIAIPCNAKSSHSIGLMWWLLAR 441
           EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 197 EAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 355 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 474
           L  S+  N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 99  LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 424 VVCFPVTSAGMLWLICSSTVTPEESEKD 341
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 470 IGLMWWLLAREVLRLRGVLPRDQRWD 393
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -3

Query: 542 LCNTDSPLRFVD--IAIPCNAKSSHSI-GLMWWLLAREVLRLRGVLPRDQRWDV 390
           L   D  ++  D  +A   NA   HS+ G  +W+ A EV+ L G       W V
Sbjct: 138 LTTKDGTIKLADFGVATKINALEDHSVVGSPYWM-APEVIELVGATTASDIWSV 190


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 466 PIEWEDLALHGIAMSTNLSGESVLHKAITGMLTYEASVMG 585
           PIE+E++ + G+  +   SG++ LH+AI  +   +  + G
Sbjct: 49  PIEFEEIDVTGMEKNNKSSGDA-LHEAIQSLKRNKVGLKG 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,459
Number of Sequences: 5004
Number of extensions: 44997
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)