Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_C19
(1196 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 37 0.027
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.44
12_01_0347 + 2658545-2659309 30 3.1
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 30 3.1
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 7.2
07_01_0479 + 3606663-3607448 29 7.2
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 7.2
12_02_1174 - 26696869-26698191 29 9.6
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 29 9.6
03_01_0515 - 3864796-3865425 29 9.6
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 37.1 bits (82), Expect = 0.027
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = +3
Query: 246 PGXPPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPPXXXXXXXXPSEXPTIGWG 413
P PPP G GG P P G PPPPP P +G G
Sbjct: 1184 PPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGGRGVVGHG 1239
Score = 30.3 bits (65), Expect = 3.1
Identities = 18/56 (32%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Frame = +3
Query: 249 GXPPPXXXGXXGGXPPXXXXXG------PXXXXGRKKXPPPPPXXXXXXXXPSEXP 398
G PPP G GG P G P G PPPPP P P
Sbjct: 1147 GVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPP 1202
Score = 29.1 bits (62), Expect = 7.2
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +3
Query: 255 PPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPPXXXXXXXXPSEXPTIGWG 413
PPP G G PP P G + PP PP P P G G
Sbjct: 1110 PPPPPPGGITGVPPPP----PIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLG 1158
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.1 bits (72), Expect = 0.44
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +3
Query: 255 PPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPPXXXXXXXXPSEXPTIGWG 413
PPP G PP P G KK PPPP P P + G
Sbjct: 346 PPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVPTG 398
Score = 29.9 bits (64), Expect = 4.1
Identities = 19/75 (25%), Positives = 23/75 (30%), Gaps = 1/75 (1%)
Frame = +3
Query: 180 PLPXXRXXXSKXXXXXXXKKNTPGXPPPXXXGXXGGXPPXXXXX-GPXXXXGRKKXPPPP 356
PLP R S+ +P PPP PP K PPPP
Sbjct: 289 PLPPGRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPP 348
Query: 357 PXXXXXXXXPSEXPT 401
P P + P+
Sbjct: 349 PAKGPPPPPPPKGPS 363
>12_01_0347 + 2658545-2659309
Length = 254
Score = 30.3 bits (65), Expect = 3.1
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = -2
Query: 406 PIVGLSEGLXQXXXXXGGGGGXFFLPXXXXGPXXXXXGGXPP 281
PI+GLS L GGGGG F P GG P
Sbjct: 74 PIIGLSRKLGHGGGGGGGGGGGFRPPAIFPKKAKTGGGGRTP 115
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 30.3 bits (65), Expect = 3.1
Identities = 19/65 (29%), Positives = 20/65 (30%)
Frame = +3
Query: 246 PGXPPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPPXXXXXXXXPSEXPTIGWGPFFF 425
P PPP G PP P G + PPPPP P G F
Sbjct: 277 PQAPPPPPPNAPMGMPPRIP---PPPVGGTQPPPPPPPLANGPPRSIPPPPMTGGAMANF 333
Query: 426 XPXXP 440
P P
Sbjct: 334 TPGAP 338
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.1 bits (62), Expect = 7.2
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +3
Query: 255 PPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPP 359
PPP G PP P PPPPP
Sbjct: 94 PPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPP 128
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.1 bits (62), Expect = 7.2
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +3
Query: 246 PGXPPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPP 359
P PP G GG PP P R PPPPP
Sbjct: 214 PMGPPQVRPGMPGGPPPGMRPGMPPPPF-RPGMPPPPP 250
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 7.2
Identities = 17/59 (28%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Frame = +3
Query: 246 PGXPPPXXXGXXGGXPPXXXXXGP--XXXXGRKKXPPPPPXXXXXXXXPSEXPTIGWGP 416
P P P G G PP P G PPPPP P + GP
Sbjct: 335 PPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGP 393
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.7 bits (61), Expect = 9.6
Identities = 16/60 (26%), Positives = 19/60 (31%)
Frame = +3
Query: 180 PLPXXRXXXSKXXXXXXXKKNTPGXPPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPP 359
P P R K + P PPP PP P + + PPPPP
Sbjct: 192 PPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPPTVPPRTPGDTPAVVEPKPQPPPPPP 251
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 28.7 bits (61), Expect = 9.6
Identities = 16/56 (28%), Positives = 19/56 (33%)
Frame = +3
Query: 246 PGXPPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPPXXXXXXXXPSEXPTIGWG 413
P PP GG PP P +++ PPPP P P WG
Sbjct: 4 PPPPPQAGVAGGGGAPPQWGAIPPPVPHQQQQYAPPPPQMWGQAPPP---PPQMWG 56
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.7 bits (61), Expect = 9.6
Identities = 15/57 (26%), Positives = 15/57 (26%)
Frame = +3
Query: 246 PGXPPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPPXXXXXXXXPSEXPTIGWGP 416
P PPP PP P PPPP S P W P
Sbjct: 68 PLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPPPPPAWSP 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,774,622
Number of Sequences: 37544
Number of extensions: 341441
Number of successful extensions: 738
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3654850728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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