Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_C19
(1196 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.92
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.92
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.92
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.5
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 29 6.5
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 29 6.5
AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical ... 29 6.5
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 8.6
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 8.6
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 8.6
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.92
Identities = 20/62 (32%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Frame = +3
Query: 243 TPGXPPPXXXGXX----GGXPPXXXXXGPXXXXGRKKXPPPPPXXXXXXXXPSEXPTIGW 410
T G PPP G GG PP G G PPPPP P
Sbjct: 723 TGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782
Query: 411 GP 416
GP
Sbjct: 783 GP 784
Score = 30.3 bits (65), Expect = 2.8
Identities = 26/83 (31%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Frame = +3
Query: 243 TPGXPPPXXXGXXGGXPPXXXXXGPXXXX-GRKKXPPPPPXXXXXXXXPSEXPTIGWGPF 419
T G PPP G G PP P G PPPPP P P P
Sbjct: 739 TGGPPPPPPPG---GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP----PG 791
Query: 420 FFXPXXPXXFFF*NFXPPKXXXK 488
F P P ++ PPK K
Sbjct: 792 MFAPMAP---VIPDYLPPKKVPK 811
Score = 29.5 bits (63), Expect = 4.9
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 255 PPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPPXXXXXXXXPSEXP 398
PPP GG PP G G PPPP P P
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
Score = 28.7 bits (61), Expect = 8.6
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 243 TPGXPPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPP 359
T G PPP G PP G PPPPP
Sbjct: 710 TGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 748
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.92
Identities = 20/62 (32%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Frame = +3
Query: 243 TPGXPPPXXXGXX----GGXPPXXXXXGPXXXXGRKKXPPPPPXXXXXXXXPSEXPTIGW 410
T G PPP G GG PP G G PPPPP P
Sbjct: 723 TGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782
Query: 411 GP 416
GP
Sbjct: 783 GP 784
Score = 30.3 bits (65), Expect = 2.8
Identities = 26/83 (31%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Frame = +3
Query: 243 TPGXPPPXXXGXXGGXPPXXXXXGPXXXX-GRKKXPPPPPXXXXXXXXPSEXPTIGWGPF 419
T G PPP G G PP P G PPPPP P P P
Sbjct: 739 TGGPPPPPPPG---GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP----PG 791
Query: 420 FFXPXXPXXFFF*NFXPPKXXXK 488
F P P ++ PPK K
Sbjct: 792 MFAPMAP---VIPDYLPPKKVPK 811
Score = 29.5 bits (63), Expect = 4.9
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 255 PPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPPXXXXXXXXPSEXP 398
PPP GG PP G G PPPP P P
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
Score = 28.7 bits (61), Expect = 8.6
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 243 TPGXPPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPP 359
T G PPP G PP G PPPPP
Sbjct: 710 TGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 748
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.92
Identities = 20/62 (32%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Frame = +3
Query: 243 TPGXPPPXXXGXX----GGXPPXXXXXGPXXXXGRKKXPPPPPXXXXXXXXPSEXPTIGW 410
T G PPP G GG PP G G PPPPP P
Sbjct: 306 TGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 365
Query: 411 GP 416
GP
Sbjct: 366 GP 367
Score = 30.3 bits (65), Expect = 2.8
Identities = 26/83 (31%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Frame = +3
Query: 243 TPGXPPPXXXGXXGGXPPXXXXXGPXXXX-GRKKXPPPPPXXXXXXXXPSEXPTIGWGPF 419
T G PPP G G PP P G PPPPP P P P
Sbjct: 322 TGGPPPPPPPG---GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP----PG 374
Query: 420 FFXPXXPXXFFF*NFXPPKXXXK 488
F P P ++ PPK K
Sbjct: 375 MFAPMAP---VIPDYLPPKKVPK 394
Score = 29.5 bits (63), Expect = 4.9
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 255 PPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPPXXXXXXXXPSEXP 398
PPP GG PP G G PPPP P P
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 345
Score = 28.7 bits (61), Expect = 8.6
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 243 TPGXPPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPP 359
T G PPP G PP G PPPPP
Sbjct: 293 TGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 331
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +3
Query: 243 TPGXPPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPP 359
TP PPP G PP P G PPPPP
Sbjct: 284 TPRPPPPPSSGMWPPPPPPPPGRTP-GPPGMPGMPPPPP 321
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +3
Query: 243 TPGXPPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPP 359
TP PPP G PP P G PPPPP
Sbjct: 294 TPRPPPPPSSGMWPPPPPPPPGRTP-GPPGMPGMPPPPP 331
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/54 (27%), Positives = 16/54 (29%)
Frame = +3
Query: 240 NTPGXPPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPPXXXXXXXXPSEXPT 401
+ P PPP G P G PPPP PS PT
Sbjct: 119 SAPPVPPPAPVPAVEGKKPSIVSSSSFSHHGATSSAPPPPPPPPPVSVPSSKPT 172
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/54 (27%), Positives = 16/54 (29%)
Frame = +3
Query: 240 NTPGXPPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPPXXXXXXXXPSEXPT 401
+ P PPP G P G PPPP PS PT
Sbjct: 119 SAPPVPPPAPVPAVEGKKPSIVSSSSFSHHGATSSAPPPPPPPPPVSVPSSKPT 172
>AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical
protein Y54E2A.8 protein.
Length = 485
Score = 29.1 bits (62), Expect = 6.5
Identities = 22/79 (27%), Positives = 26/79 (32%)
Frame = +3
Query: 345 PPPPPXXXXXXXXPSEXPTIGWGPFFFXPXXPXXFFF*NFXPPKXXXKXFLNFGVXXKVX 524
PPPP E P P F P P + PP+ +NFG K+
Sbjct: 170 PPPPVPPLSPLYKVLEIPATP-SPIFVAPLPPPPAYTTPDVPPEPMCSLRINFGNSLKIP 228
Query: 525 PPLFX*XNXFKRFPKEKXT 581
P K PK K T
Sbjct: 229 PRKIIEKPVEKAPPKAKMT 247
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.7 bits (61), Expect = 8.6
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -3
Query: 141 PXPPPXXQXXGGXXNXXGPYXPXXGXPP 58
P PP Q GG PY P G PP
Sbjct: 681 PPPPQGQQYYGGPPPPGQPYGPPGGYPP 708
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.7 bits (61), Expect = 8.6
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -3
Query: 141 PXPPPXXQXXGGXXNXXGPYXPXXGXPP 58
P PP Q GG PY P G PP
Sbjct: 681 PPPPQGQQYYGGPPPPGQPYGPPGGYPP 708
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = +3
Query: 246 PGXPPPXXXGXXGGXPPXXXXXGPXXXXGRKKXPPPPPXXXXXXXXPSEXPTIGWGP 416
PG P P G G PP P G PP PP P P +G+ P
Sbjct: 686 PGQPRPA--GLPPGVPPMFNLNAPPPP-GIPGYPPAPPPPGVGPPPPQGIPPMGFDP 739
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,769,979
Number of Sequences: 27780
Number of extensions: 234371
Number of successful extensions: 510
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3286854270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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