Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_C17
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    90   3e-19
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    90   4e-19
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.1  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 49/130 (37%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
 Frame = -3

Query: 779 KGPLIIXNKDQVXXGPFXXXPVWXS*MLTX*TXXKLXPGGHFGRFVIWXQSAFGRXDPLF 600
           +GPL++ N+D      F   P      +      +L PGGH GRFVIW +SAFG  D +F
Sbjct: 205 RGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVF 264

Query: 599 GSWXTPSXQKXNFNLPQPKMANTDLTRXFKFDEIRKVLRXP-XKRVIRV-TRKLNPLTNN 426
           GS    +  K N+ LP+  ++N D+TR    DEI+ +++     RV R   +K NPL N 
Sbjct: 265 GSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNK 324

Query: 425 KAMXKXNPYA 396
             + + NPYA
Sbjct: 325 AVLARLNPYA 334


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 89.8 bits (213), Expect = 4e-19
 Identities = 49/130 (37%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
 Frame = -3

Query: 779 KGPLIIXNKDQVXXGPFXXXPVWXS*MLTX*TXXKLXPGGHFGRFVIWXQSAFGRXDPLF 600
           +GPL++ N+D      F   P      +      +L PGGH GRFVIW +SAFG  D +F
Sbjct: 205 RGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVF 264

Query: 599 GSWXTPSXQKXNFNLPQPKMANTDLTRXFKFDEIRKVLRXP-XKRVIRV-TRKLNPLTNN 426
           GS    +  K N+ LP+  ++N D+TR    DEI+ +++     RV R   +K NPL N 
Sbjct: 265 GSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNK 324

Query: 425 KAMXKXNPYA 396
             + + NPYA
Sbjct: 325 AVLSRLNPYA 334


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -1

Query: 580 RNKXRISTCPSQRWPTLTSHV--FSSLMRSGRSSVXPTNX*SVLHAN*TRSPIT 425
           RN   IST PSQR+  +T  +  F+ L  S +S + P    S++  +  ++PIT
Sbjct: 169 RNIYSISTLPSQRFEIVTGFLSPFNKLYFS-KSLIVPRKDVSIVTYSLQKNPIT 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,758,463
Number of Sequences: 5004
Number of extensions: 24328
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)