Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_C17
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           97   1e-20
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    94   1e-19
02_04_0073 - 19471254-19472681                                         28   7.4  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/92 (47%), Positives = 60/92 (65%)
 Frame = -3

Query: 674 LXPGGHFGRFVIWXQSAFGRXDPLFGSWXTPSXQKXNFNLPQPKMANTDLTRXFKFDEIR 495
           L PGGH GRFVIW +SAF + + ++G++  PS +K  F LP+PKMAN DL R    DE++
Sbjct: 245 LAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQ 304

Query: 494 KVLRXPXKRVIRVTRKLNPLTNNKAMXKXNPY 399
            V++   K V R  ++ NPL N  A+ K NPY
Sbjct: 305 SVVKPLNKEVKRREKRKNPLKNVAAVLKLNPY 336


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 43/92 (46%), Positives = 58/92 (63%)
 Frame = -3

Query: 674 LXPGGHFGRFVIWXQSAFGRXDPLFGSWXTPSXQKXNFNLPQPKMANTDLTRXFKFDEIR 495
           L PGGH GRFVIW + AF + D ++G + TP+ +K  F LP+PKMAN DL+R    DE++
Sbjct: 244 LAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQ 303

Query: 494 KVLRXPXKRVIRVTRKLNPLTNNKAMXKXNPY 399
            V++   K V     + NPL N  A+ K NPY
Sbjct: 304 SVVKPINKEVKLREARRNPLKNVAAVLKLNPY 335


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 631 SPHSAGLTPYSGHGRHHRNK 572
           +P   G +P S HG HHR++
Sbjct: 20  APRPRGASPLSSHGHHHRSR 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,495,407
Number of Sequences: 37544
Number of extensions: 194180
Number of successful extensions: 290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)