Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_C17
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    86   3e-17

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
 Frame = -3

Query: 776 GPLIIXNKDQVXXGPFXXXPVWXS*MLTX*TXXKLXPGGHFGRFVIWXQSAFGRXDPLFG 597
           GP++I  +D      F   P      +      KL PGGH GR +IW +SAF + D ++G
Sbjct: 205 GPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYG 264

Query: 596 SWXTPSXQ-KXNFNLPQPKMANTDLTRXFKFDEIRKVLRXPXKRVIRVTRKLNPLTNNKA 420
           +    S Q K  +++P P MAN+D +R  + +E+ K +R P K  +      NPL     
Sbjct: 265 TTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTL 324

Query: 419 MXKXNPYAAV 390
           + K NPYA++
Sbjct: 325 LYKLNPYASI 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,921,170
Number of Sequences: 27780
Number of extensions: 146133
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)