Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_C15
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0385 + 2915532-2916482                                           30   2.0  
11_04_0415 - 17395988-17396161,17397349-17397444,17397489-173980...    29   3.6  
07_03_1432 - 26508135-26508881,26509301-26509708                       29   3.6  

>11_01_0385 + 2915532-2916482
          Length = 316

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = +3

Query: 570 PXXXXXPGXPXPXXRGPXLAXXXXPXPPXXLXPXPRXXXPXPANSXXFXPLP 725
           P     P  P P    P       P PP    P P    P P N   + PLP
Sbjct: 246 PPLPPFPSHPPPTPAWPHPGNQWPPLPPFPFHPPPMPAWPHPGNQ--WPPLP 295



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = +3

Query: 570 PXXXXXPGXPXPXXRGPXLAXXXXPXPPXXLXPXPRXXXPXPANSXXFXPLP 725
           P     P  P P    P       P PP    P P    P P N   + PLP
Sbjct: 223 PPLPPFPSHPPPTPAWPQPGNKWPPLPPFPSHPPPTPAWPHPGNQ--WPPLP 272


>11_04_0415 -
           17395988-17396161,17397349-17397444,17397489-17398026,
           17398106-17398422
          Length = 374

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 673 GXGXRXXGGXGXXXFARXGPRXHGXGXP 590
           G G R  GG G   F   GPR  G G P
Sbjct: 13  GGGPRGFGGGGPRGFGGGGPRGFGGGGP 40



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 673 GXGXRXXGGXGXXXFARXGPRXHGXGXP 590
           G G R  GG G   F   GPR  G G P
Sbjct: 21  GGGPRGFGGGGPRGFGGGGPRGFGGGGP 48


>07_03_1432 - 26508135-26508881,26509301-26509708
          Length = 384

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/63 (28%), Positives = 21/63 (33%)
 Frame = +3

Query: 513 GLVGGAARPSRXTAQXXXPPXXXXXPGXPXPXXRGPXLAXXXXPXPPXXLXPXPRXXXPX 692
           G  G A+ P+  T            P  P P    P LA      P   L P P    P 
Sbjct: 21  GYTGNASPPTPITYPSPPSLSPSTPPTYPPPSSTPPSLAPVSPSPPTTYLPPSPTPPSPA 80

Query: 693 PAN 701
           PA+
Sbjct: 81  PAS 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,975,929
Number of Sequences: 37544
Number of extensions: 191505
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)