Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_C06
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 222 2e-58
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 217 1e-56
07_01_0761 + 5849466-5850677 31 1.5
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.4
11_01_0710 - 5830475-5830595,5831498-5834124 28 7.8
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 7.8
03_06_0491 - 34295484-34295793,34297160-34297644 28 7.8
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 222 bits (543), Expect = 2e-58
Identities = 121/237 (51%), Positives = 156/237 (65%), Gaps = 3/237 (1%)
Frame = -2
Query: 815 VRVVAHXSNEAVKQ-RQKKAHIMESNXXGVPSRTK*N-GPENIWRNLSL-SILCLPKMK* 645
VRV+ H +K +QKKAH+ME G K + G + + + + ++ +M
Sbjct: 160 VRVIVHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMID 219
Query: 644 LTALVSPRAKDTKVSLLVGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHH 465
+ + + + V+ G R P + + LRKVACIGAWHP+RVS+TVARAGQ GYHH
Sbjct: 220 IIGVTKGKGYEGVVTRW-GVTR-LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHH 277
Query: 464 RTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGC 285
RTEMNKK+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++MIKGC
Sbjct: 278 RTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGC 331
Query: 284 CMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
C+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 332 CVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 64.9 bits (151), Expect = 7e-11
Identities = 31/65 (47%), Positives = 39/65 (60%)
Frame = -1
Query: 747 IQLXRGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR 568
IQ+ GTI DKV + + EK IPVD+VF +DEMID I +RW +LPR
Sbjct: 184 IQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Query: 567 KTHQG 553
KTH+G
Sbjct: 244 KTHRG 248
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 217 bits (529), Expect = 1e-56
Identities = 118/229 (51%), Positives = 153/229 (66%), Gaps = 3/229 (1%)
Frame = -2
Query: 815 VRVVAHXSNEAVKQ-RQKKAHIMESNXXGVPSRTK*N-GPENIWRNLSL-SILCLPKMK* 645
VRV+AH +K +QKKAH+ME G K + G + + + + ++ +M
Sbjct: 160 VRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMID 219
Query: 644 LTALVSPRAKDTKVSLLVGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHH 465
+ + + + V+ G R P + + LRKVACIGAWHP+RVS+TVARAGQ GYHH
Sbjct: 220 IIGVTKGKGYEGVVTRW-GVTR-LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHH 277
Query: 464 RTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGC 285
RTEMNKK+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++MIKGC
Sbjct: 278 RTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGC 331
Query: 284 CMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 138
C+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K
Sbjct: 332 CVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 64.9 bits (151), Expect = 7e-11
Identities = 31/65 (47%), Positives = 39/65 (60%)
Frame = -1
Query: 747 IQLXRGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR 568
IQ+ GTI DKV + + EK IPVD+VF +DEMID I +RW +LPR
Sbjct: 184 IQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Query: 567 KTHQG 553
KTH+G
Sbjct: 244 KTHRG 248
>07_01_0761 + 5849466-5850677
Length = 403
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -2
Query: 605 VSLLVGTQRSYPVRHTKXLRKVACI--GAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 432
V+LLVG R V V+ + G HP SFT+ RA H K+ RI
Sbjct: 129 VALLVGNDRRLRVLDAAASAAVSLVPDGEHHPINCSFTLGRAASSSGEH------KVLRI 182
Query: 431 GQGIH 417
G +H
Sbjct: 183 GTVVH 187
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 371 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 276
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 638 QSIISSWANTESTGIGFSRCSLAHFTLS-SMVPRXSW 745
+S+ISSW + TG S CS+ + + +P W
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVVKFCTLPLSQW 686
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -2
Query: 515 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 366
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 365 SEKSITPMGGFPHYGEVNN 309
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
>03_06_0491 - 34295484-34295793,34297160-34297644
Length = 264
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 787 KLXNSDKRRLTLWNPTXXGYHRGQSEMGQ 701
++ SD+R T WN G+H GQ+ G+
Sbjct: 232 RVTGSDRRTSTSWNAAPAGWHFGQTFEGK 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,527,142
Number of Sequences: 37544
Number of extensions: 481836
Number of successful extensions: 1116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -