Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_C05
         (955 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.25 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   1.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   2.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   9.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.25
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 165 PPSPSRSNRWGSLLPPLXSMPGA 233
           PP P+ SN  G  +PPL +MPG+
Sbjct: 418 PPIPNMSNMSG--MPPLPNMPGS 438



 Score = 26.2 bits (55), Expect = 0.44
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 102 PRPTPRGWPPGAAXRCPIGGTPPSPSRSNRWGSLLPP 212
           P+   RG PP  +   P GG P +P   N    ++ P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 238 QPAPGIXYSGGRREPHRLLREGDGGVPPIGQRXAAPGGQP 119
           QP+ G    G +  PH+  +    G PP   +   PGG P
Sbjct: 15  QPSSGAP--GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 102 PRPTPRGWPPGAAXRCPIGGTPPSPSRSNRWGSLLPPLXSMPGA 233
           P+P+P   P     + P  G+PP+PS+        PP    PGA
Sbjct: 23  PQPSPHQSP-----QAPQRGSPPNPSQG-------PPPGGPPGA 54


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 112 HHEAGHQALXGAARSEVHHHHLH 180
           HH+ G+  + G      HHHH H
Sbjct: 335 HHQHGNHTM-GPTMGPPHHHHHH 356


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 112 HHEAGHQALXGAARSEVHHHHLHVA 186
           HH  GH        +  HHHH H A
Sbjct: 416 HHTMGHG--HSHIHATPHHHHSHAA 438


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 144 RCPIGGTPPSPSRSNRWGSLLPPL 215
           +C + GTPP P    R G+ L  L
Sbjct: 331 KCDVTGTPPPPLVWRRNGADLETL 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,711
Number of Sequences: 438
Number of extensions: 3390
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)