Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_C04
(822 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 93 4e-20
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch... 29 0.80
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces... 26 5.6
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.6
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 26 7.4
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 25 9.8
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 9.8
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy... 25 9.8
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 25 9.8
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 9.8
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 93.1 bits (221), Expect = 4e-20
Identities = 61/192 (31%), Positives = 84/192 (43%)
Frame = -2
Query: 773 QXRDGTXXIIRTRHMRATXPRNRGMRSLEC*RSDYDRQRFIPERRXGNVLDSFARHALWE 594
Q +DGT + RT H R +L P+ G ++D AR LW+
Sbjct: 401 QYKDGTTDVTRTWHFGEPSEFERQTATLALKGHIALANIVFPKGTTGYMIDVLARQYLWK 460
Query: 593 XXXXXXXXXXXXXXXXLNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYKVGEYGIRHE 414
LNVHE P G+ R + L G + SNEPGFY+ G +G R E
Sbjct: 461 YGLDYLHGTGHGVGSFLNVHELPVGIGSREVFNSAPLQAGMVTSNEPGFYEDGHFGYRVE 520
Query: 413 DLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEISYVNA 234
+ + I V N + GR LG LTL P+ ++ ID +L+ E+ Y+N
Sbjct: 521 NCVYITEV----------NTENRFAGRTYLGLKDLTLAPHCQKLIDPSLLSPEEVKYLNE 570
Query: 233 YHRRVLDTLSPI 198
YH V TLSP+
Sbjct: 571 YHSEVYTTLSPM 582
>SPBC16D10.01c ||SPBC418.03c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 29.1 bits (62), Expect = 0.80
Identities = 23/92 (25%), Positives = 43/92 (46%)
Frame = -2
Query: 479 VGQILSNEPGFYKVGEYGIRHEDLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLV 300
+ QI N K+ + G+ ++E + +DKG D K ++G Y L + L +
Sbjct: 84 LAQINDNGSKALKLYQKGVT---ILERLLIDKGEDADLKKKIQGAYCSIAELFMTDLCMQ 140
Query: 299 PNQRECIDAEILTDFEISYVNAYHRRVLDTLS 204
P+ E + E+ T + ++A + L TL+
Sbjct: 141 PDAEE--NCELYTKLALQ-IDATNAEALQTLA 169
>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 476 GQILSNEPGFYKVGEYGIRHEDLI 405
G + + EPG Y E GIR ED +
Sbjct: 408 GNVFTVEPGIYIPDEIGIRIEDAV 431
>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 105
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 749 IIRTRHMRATXPRNRGMRS 693
II+ +H +A PRN GMRS
Sbjct: 38 IIKKQHRQADLPRNFGMRS 56
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 673 IMIGSALFPKGVKATFWTA-SRVTPCGRWAWTTVTGRVT 560
+MIGS LFP G+ FW A S W T++G +T
Sbjct: 411 MMIGSVLFPAGI---FWLAWSGYYTHVHWIVPTLSGLLT 446
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 9.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 440 VGEYGIRHEDLIEIVAVDKGSDHPKAKNL-RGDYDGRGVLGFSTLTLV 300
VG+ + +DL+EI + G P L GDY RG T+TL+
Sbjct: 49 VGDIHGQFDDLLEIFRI--GGPCPYTNYLFLGDYVDRGYYSIETITLL 94
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 423 NSVFPDFVEARFVAQYLSNVQSRIVGVRTPRDTGRTLVHVEVV 551
N FP AR AQ+++N S+ + V T D R L+ VV
Sbjct: 650 NMHFPQSTNARSEAQFIANTDSQYL-VPTSGDPLRGLIQDHVV 691
>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -1
Query: 492 SWTERWTD---IEQRTWLLQSRGIRNSPRRSNRDCGC 391
S+ E+ T+ IE W+L + G+ N R+N GC
Sbjct: 60 SYAEKETEVQAIEVTKWILSNGGVWNGIDRANETPGC 96
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 673 IMIGSALFPKGVKATFWTA-SRVTPCGRWAWTTVTGRVT 560
+MIGS LFP G+ FW A S W T++G +T
Sbjct: 453 MMIGSFLFPAGI---FWLAWSGYYTYVHWIVPTLSGLLT 488
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -1
Query: 513 VASVPRRSWTERWTDIEQRTW 451
V+ +R+WT W I R W
Sbjct: 204 VSQQQQRAWTRAWNAIRNRAW 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,831
Number of Sequences: 5004
Number of extensions: 57634
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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