Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_C04
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0747 - 5724586-5724648,5725229-5725309,5725564-5725656,572... 108 5e-24
11_05_0099 - 19044772-19044837,19044896-19045051,19045529-190456... 85 8e-17
06_03_1033 - 27035977-27036144,27036420-27036544,27036695-270367... 83 3e-16
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585... 78 7e-15
07_01_0252 + 1883709-1885306,1886338-1886466,1887319-1887341,188... 30 1.9
01_07_0231 + 42176598-42178117,42178232-42179753 30 1.9
12_01_0134 + 1017278-1018540,1018626-1019882 29 4.5
11_01_0131 + 1086916-1088127,1088213-1089469 29 4.5
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 29 5.9
01_06_0685 - 31218716-31218873,31218974-31219266,31219366-312195... 29 5.9
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 28 7.8
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 28 7.8
>07_01_0747 - 5724586-5724648,5725229-5725309,5725564-5725656,
5725775-5725929,5726023-5726131,5726291-5726481,
5727463-5727614,5728453-5728728,5729415-5729587,
5730023-5730298,5730839-5730958,5731051-5731176,
5731629-5731970
Length = 718
Score = 108 bits (260), Expect = 5e-24
Identities = 69/195 (35%), Positives = 94/195 (48%)
Frame = -2
Query: 773 QXRDGTXXIIRTRHMRATXPRNRGMRSLEC*RSDYDRQRFIPERRXGNVLDSFARHALWE 594
Q DGT I RT H PR + + Q PER G VLD AR +LW+
Sbjct: 522 QYIDGTTDITRTVHFGEPTPRQKECFTRVLQGHIALDQAVFPERTPGFVLDVLARSSLWK 581
Query: 593 XXXXXXXXXXXXXXXXLNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYKVGEYGIRHE 414
LNVHEGP +S+R Y + L G I+SNEPG+Y+ +GIR E
Sbjct: 582 IGLDYRHGTGHGVGAALNVHEGPQSISYR-YGNLTALQKGMIVSNEPGYYEDNSFGIRIE 640
Query: 413 DLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEISYVNA 234
+L+ + K NL + G LGF LT VP Q + +D +L+ EI+++N
Sbjct: 641 NLLLV----------KEVNLPNSFGGVSYLGFEKLTFVPIQSKLVDLSLLSPSEINWINE 690
Query: 233 YHRRVLDTLSPIXEG 189
YH V + +SP+ G
Sbjct: 691 YHDEVWEKVSPLLSG 705
>11_05_0099 - 19044772-19044837,19044896-19045051,19045529-19045653,
19045773-19045844,19045947-19046051,19046509-19046563,
19047334-19047414,19047499-19047633,19048279-19048342,
19048844-19048911,19049082-19049168,19050247-19050501,
19050616-19050738,19050866-19051150,19051712-19051851,
19052385-19052445,19052537-19052637,19052807-19052870,
19053020-19053127
Length = 716
Score = 84.6 bits (200), Expect = 8e-17
Identities = 57/191 (29%), Positives = 81/191 (42%)
Frame = -2
Query: 773 QXRDGTXXIIRTRHMRATXPRNRGMRSLEC*RSDYDRQRFIPERRXGNVLDSFARHALWE 594
Q DGT I RT H + + P G+ LD AR LW
Sbjct: 497 QYLDGTTDITRTVHFGKPSEHEKSCYTAVLKGHIALDSAVFPNGTTGHALDILARTPLWR 556
Query: 593 XXXXXXXXXXXXXXXXLNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYKVGEYGIRHE 414
LNVHEGP +S+RP + L +++EPG+Y+ G +GIR E
Sbjct: 557 SGLDYRHGTGHGIGSYLNVHEGPHLISFRPSARNIPLQASMTVTDEPGYYEDGSFGIRLE 616
Query: 413 DLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEISYVNA 234
+++ + K N + ++ +G L F +T P Q + ID +LT EI +VNA
Sbjct: 617 NVLIV----------KEANTKYNFGDKGYLAFEHITWAPYQTKLIDTTLLTPAEIEWVNA 666
Query: 233 YHRRVLDTLSP 201
YH L P
Sbjct: 667 YHADCRKILQP 677
>06_03_1033 -
27035977-27036144,27036420-27036544,27036695-27036766,
27036872-27036976,27037513-27037567,27038196-27038276,
27039109-27039159,27039531-27039594,27040783-27040850,
27040993-27041079,27041401-27041655,27041768-27041890,
27042013-27042297,27042948-27043087,27043696-27043759,
27043929-27044048
Length = 620
Score = 83.0 bits (196), Expect = 3e-16
Identities = 55/188 (29%), Positives = 80/188 (42%)
Frame = -2
Query: 764 DGTXXIIRTRHMRATXPRNRGMRSLEC*RSDYDRQRFIPERRXGNVLDSFARHALWEXXX 585
DGT I RT H + + P G+ +D AR LW
Sbjct: 422 DGTTDITRTVHFGKPSEHEKSCYTAVLKGHIALDTAVFPNGTTGHAIDILARTPLWRSGL 481
Query: 584 XXXXXXXXXXXXXLNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYKVGEYGIRHEDLI 405
LNVHEGP +S+RP + L +++EPG+Y+ G +GIR E+++
Sbjct: 482 DYRHGTGHGIGSYLNVHEGPHLISFRPSARNVPLQASMTVTDEPGYYEDGSFGIRLENVL 541
Query: 404 EIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEISYVNAYHR 225
+ K N + ++ +G L F +T P Q + ID +LT EI +VNAYH
Sbjct: 542 IV----------KEANTKFNFGDKGYLAFEHITWTPYQTKLIDTTLLTPAEIEWVNAYHS 591
Query: 224 RVLDTLSP 201
L P
Sbjct: 592 DCRKILQP 599
>11_05_0100 -
19056465-19056470,19057043-19057276,19058391-19058546,
19059639-19059763,19059912-19059983,19060080-19060184,
19060691-19060745,19061576-19061656,19062806-19062869,
19064715-19064782,19064947-19065033,19066121-19066285,
19066310-19066429,19066485-19066607,19066738-19067019,
19067936-19068075,19068234-19068335,19068802-19068874,
19069061-19069171
Length = 722
Score = 78.2 bits (184), Expect = 7e-15
Identities = 54/186 (29%), Positives = 81/186 (43%), Gaps = 3/186 (1%)
Frame = -2
Query: 764 DGTXXIIRTRHMRATXPRNRGMRSLEC*RSDYDRQRFIPERRXGNVLDSFARHALWEXXX 585
DGT I RT H + + P G+ LD AR LW+
Sbjct: 448 DGTTDITRTVHFGKPSEHEKSCYTAVLKGHIALDTAVFPNGTTGHALDILARTPLWKSGL 507
Query: 584 XXXXXXXXXXXXXLNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYKVGEYGIRHEDLI 405
L VHEGP +S+RP + L +++EPG+Y+ G +GIR E+++
Sbjct: 508 DYRHGTGHGVGSYLTVHEGPHQISFRPSARNVPLQASMTVTDEPGYYQDGSFGIRLENVL 567
Query: 404 EIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEISYVNAYH- 228
+ + N + ++ +G L F +T P Q + IDA +L EI +VN YH
Sbjct: 568 IV----------QDANTKFNFGDKGYLAFEHITWAPYQTKLIDATLLAPAEIEWVNTYHS 617
Query: 227 --RRVL 216
RR+L
Sbjct: 618 DCRRIL 623
>07_01_0252 +
1883709-1885306,1886338-1886466,1887319-1887341,
1887455-1888023
Length = 772
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 643 GVKATFWTASRVTPCGR-WAWTTVTGRVTAWVTTSTCTRVRPVSRGVR 503
G++A W A RV PCG WA T G VT + R R +R R
Sbjct: 49 GIRAREWPA-RVDPCGGGWAGVTCRGGRVVGVTVAGFRRTRVGARAPR 95
>01_07_0231 + 42176598-42178117,42178232-42179753
Length = 1013
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 697 VHSSAKGQIMIGSALF-PKGVKATFWTASRVTPCGRWA 587
V+ G ++ SAL P G AT WT S TPCG WA
Sbjct: 26 VNEEVLGLVVFKSALSDPSGALAT-WTESDATPCG-WA 61
>12_01_0134 + 1017278-1018540,1018626-1019882
Length = 839
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 441 FVEARFVAQYLSNVQSRIVG-VRTPRDTGRTLVHVEVVTHAVTRPVTVVQAHLPQGVTRE 617
F + R VA + R++ V PRD L ++VVT + PV V+ HL + V R
Sbjct: 458 FYKRRTVAWAHPESELRVLACVHVPRDVPALLTLLDVVTPSSRSPVGVLALHLIEFVGRS 517
Query: 618 A 620
+
Sbjct: 518 S 518
>11_01_0131 + 1086916-1088127,1088213-1089469
Length = 822
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 441 FVEARFVAQYLSNVQSRIVG-VRTPRDTGRTLVHVEVVTHAVTRPVTVVQAHLPQGVTRE 617
F + R VA + R++ V PRD L ++VVT + PV V+ HL + V R
Sbjct: 441 FYKRRTVAWAHPESELRVLACVHVPRDVPALLTLLDVVTPSSRSPVGVLALHLIEFVGRS 500
Query: 618 A 620
+
Sbjct: 501 S 501
>08_02_0672 - 19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 697 VHSSAKGQIMIGSALFPKG-VKATFWTASRVTPCGRWAWTTVTGRVTA 557
V + A G +++G+ L G V A W+A+ + R +W T V A
Sbjct: 985 VKAGATGDLVLGAVLVDGGEVNAARWSAAALVLAERVSWLTAEAAVAA 1032
>01_06_0685 -
31218716-31218873,31218974-31219266,31219366-31219559,
31219666-31220409,31221504-31221824
Length = 569
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 476 GQILSNEPGFYKVGEYGIRH 417
G L N PG + +G+YG RH
Sbjct: 109 GTYLRNGPGLWNLGDYGFRH 128
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 658 ALFPKGVKATFWTASRVTPCGRWAWTTVTG 569
ALFP V W A+R +P G A +TG
Sbjct: 94 ALFPVAVNEVIWCANRGSPLGEDATLELTG 123
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 455 PGFYKVGEYGIRHEDLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFS 315
P F+ E+ RH L+ I + +G KNL + +L FS
Sbjct: 381 PSFFASEEWKRRHAALVTIAQIAEGCARVMIKNLEQAHAASAILNFS 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,911,977
Number of Sequences: 37544
Number of extensions: 398397
Number of successful extensions: 985
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -