Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_C04
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039716-4|AAB96739.1|  616|Caenorhabditis elegans Aminopeptidas...    86   3e-17
AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical ...    66   3e-11
AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical...    31   1.00 

>AF039716-4|AAB96739.1|  616|Caenorhabditis elegans Aminopeptidase p
           protein 1 protein.
          Length = 616

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 57/150 (38%), Positives = 76/150 (50%)
 Frame = -2

Query: 665 RQRFIPERRXGNVLDSFARHALWEXXXXXXXXXXXXXXXXLNVHEGPSGVSWRPYPDDPG 486
           R +F P+   G+ LD+  R ALW+                LNVHEGP G+  R  P    
Sbjct: 454 RAKF-PDGIYGSRLDTLTRDALWKLGLDFEHGTGHGVGHYLNVHEGPIGIGHRSVPTGGE 512

Query: 485 LNVGQILSNEPGFYKVGEYGIRHEDLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLT 306
           L+  Q+L+ EPGFY   +YGIR E+  E V     S   KA+N          L F +LT
Sbjct: 513 LHASQVLTIEPGFYAKEKYGIRIENCYETVEAVVMS---KAQNF---------LTFKSLT 560

Query: 305 LVPNQRECIDAEILTDFEISYVNAYHRRVL 216
           LVP Q   +D  +L + EI+++N YH RVL
Sbjct: 561 LVPIQTSIVDKSLLIEEEINWLNQYHARVL 590


>AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical
            protein Y45G5AM.2 protein.
          Length = 1061

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 43/146 (29%), Positives = 67/146 (45%)
 Frame = -2

Query: 635  GNVLDSFARHALWEXXXXXXXXXXXXXXXXLNVHEGPSGVSWRPYPDDPGLNVGQILSNE 456
            G+ LD FAR ALW+                LN+ +    +   PY  +  +  GQ+++ E
Sbjct: 908  GSRLDIFARIALWDAGLDYDHETGHSVGHFLNIRDTQIVIGREPYSSNSIIEAGQVMTIE 967

Query: 455  PGFYKVGEYGIRHEDLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECID 276
            PG+Y  G YGIR  +  E V V                + +  L F  LTL+P Q   ++
Sbjct: 968  PGYYSEGMYGIRIGNCYETVDVTLSQ------------NDQYFLRFEPLTLIPIQTSIVN 1015

Query: 275  AEILTDFEISYVNAYHRRVLDTLSPI 198
             ++LT  EI+++N YH +V   +  I
Sbjct: 1016 KDLLTSEEINWLNKYHFKVFSKIGYI 1041


>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
            protein Y47D3A.29 protein.
          Length = 1428

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 443  KVGEYGIRHEDLIEIVAVDKGSDHP 369
            K G++ +RH D++E V  + G+D+P
Sbjct: 1128 KSGKFNLRHNDIVEYVICEDGTDNP 1152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,758,569
Number of Sequences: 27780
Number of extensions: 334019
Number of successful extensions: 881
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)