Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_C01
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0063 + 6481568-6481570,6481922-6482470 35 0.056
05_06_0281 + 26912419-26913099 33 0.17
11_07_0002 - 27171791-27172222 32 0.52
09_02_0279 + 6702517-6702948 32 0.52
01_01_0256 - 2083973-2084816,2084922-2086093 31 0.91
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 31 1.2
11_01_0763 + 6402901-6403971,6404581-6404826 30 2.1
07_03_0315 - 16674660-16674712,16674966-16675158 29 2.8
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669... 29 2.8
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79... 29 3.7
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 3.7
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 29 3.7
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 29 4.8
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 28 6.4
02_05_0665 - 30720842-30721003,30721290-30721448,30721555-307216... 28 6.4
11_06_0610 - 25449085-25453284 28 8.5
08_02_1035 - 23840606-23841109,23841194-23841199 28 8.5
03_06_0199 + 32310272-32311432 28 8.5
03_03_0164 - 14979364-14979479,14979613-14980102 28 8.5
>02_02_0063 + 6481568-6481570,6481922-6482470
Length = 183
Score = 35.1 bits (77), Expect = 0.056
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = -3
Query: 454 APP*VIRATGRRCIASRPGRLVLVQRGIPGHQRHRLGGPTG 332
A P V ATGRR A+RPGRLV + + G +R GP G
Sbjct: 123 AQPWVTVATGRRDAATRPGRLVAMAATV-GSRREERRGPAG 162
>05_06_0281 + 26912419-26913099
Length = 226
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 237 QPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRD 410
+P G P + P P+ ++ +R+P GP W PG+P T+T L G D
Sbjct: 82 RPVGPTPPPPSHPVVPTPTQLAADDDGGLLRRPGGPTPPSPWHPGVP--TQTQLAGGD 137
>11_07_0002 - 27171791-27172222
Length = 143
Score = 31.9 bits (69), Expect = 0.52
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -2
Query: 428 RSTVYRVPTRQAGSGPAGYSGTPAAPSGRPDG----LPYRDGRRF 306
RS+ + +AGS PAG G+PA G P G P GR F
Sbjct: 55 RSSAASTSSARAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
>09_02_0279 + 6702517-6702948
Length = 143
Score = 31.9 bits (69), Expect = 0.52
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -2
Query: 428 RSTVYRVPTRQAGSGPAGYSGTPAAPSGRPDG----LPYRDGRRF 306
RS+ + +AGS PAG G+PA G P G P GR F
Sbjct: 55 RSSAASTSSARAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
>01_01_0256 - 2083973-2084816,2084922-2086093
Length = 671
Score = 31.1 bits (67), Expect = 0.91
Identities = 25/89 (28%), Positives = 33/89 (37%)
Frame = +2
Query: 230 NTTTRRRGSPQGRPADGAFEANRRL*NVGRLGTAARRAAQTVPLVSRNTPLDQNQPAGSG 409
++T R G P PA+ ++L AA R V V + +D+N GS
Sbjct: 223 SSTHSRGGPPNSSPAEEQRANQQKL--AAAAAVAAARHPHDVQSVPDSPMIDKNSSFGST 280
Query: 410 RDTPSTGRSNHSRXRAXXLVXXXRLTPQV 496
PS R R RL PQV
Sbjct: 281 SSAPSLSNLPPIRVRPEDRPPDSRLAPQV 309
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +2
Query: 119 PKDFRTHPLNDSPXTLTPDVRSPPRSEPG*GRG---ATAVNTTTRRRGSPQGRPA 274
PK T N +P P R+PP PG G G + ++ RRRG P G A
Sbjct: 24 PKPKPTPIRNPTPPPPPPRRRTPPPPPPGSGPGPQRPSYLSVALRRRGPPAGSAA 78
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Frame = +2
Query: 107 ADRGPKDFRTHPLNDSPXTLTP--DVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADG 280
A+ P + P + SP P D G GRGA R RG G DG
Sbjct: 21 AEADPSEETLDPASPSPDLAIPWPDPAGVDAGGGG-GRGAATHQGRRRWRGVGSGGGGDG 79
Query: 281 AFEANRRL*NVGRLGTAARRAAQ 349
A + RRL AA R A+
Sbjct: 80 AATSRRRLARQPAAAVAAARCAR 102
>07_03_0315 - 16674660-16674712,16674966-16675158
Length = 81
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 430 TGRRCIASRPGRLVLVQRGIPGHQRHRLGGPTGCRTETADVSEPSIRLEGSVG 272
TG + + S GR +L I +R R+G P GC+ + S I L VG
Sbjct: 11 TGEKGVRSGVGRDILRDEKIK--ERKRMGQPAGCQADLLICSPVKINLFSQVG 61
>04_03_0849 +
20265511-20265984,20266452-20266617,20266694-20266905,
20267154-20267647,20267732-20267780,20267922-20268251
Length = 574
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 318 VSVRQPVGPPRRCRWCPGIPRWTR 389
+ + + V PP R WCP RW R
Sbjct: 1 MEIARVVAPPLRLAWCPASRRWGR 24
>09_01_0043 +
790859-790873,791410-791603,792521-792605,792719-793075
Length = 216
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 398 QAGSGPAGYSGTPAAPSGRPDGLPYRDG 315
++GSG AG G+ A GR DG RDG
Sbjct: 118 RSGSGKAGCVGSRADQDGRLDGREVRDG 145
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 175 RPIPSEVRTRMR*GGYRGQHYNQTARLTPR 264
R PSE+R+R R G RG+ Y+Q +PR
Sbjct: 121 RKKPSEMRSRDRISGSRGRSYDQRYSRSPR 150
>07_03_0111 +
13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 155 PXTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEA 292
P D + P EP + +A T RR GSP PA A +A
Sbjct: 129 PPPSPKDAAADPAKEPSGSKAGSAAATGGRRTGSPPPSPAPVAKDA 174
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Frame = +3
Query: 180 DPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCR 359
D + G+ PD QP A P+D QP PS + TS R+ G
Sbjct: 188 DAVHGEQPDGERDADEHRGQPHQRAAPRDVQPPSPSS--SPATTSPAHPRRAHGQVLLGS 245
Query: 360 WCPGIPRW-TRTSLPGRDAIHRRPV 431
P P W + LP R R P+
Sbjct: 246 H-PRGPHWRVQGHLPQRQGPRRVPI 269
>07_03_0603 -
19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +2
Query: 140 PLNDSPXTLTPDVRSPP--RSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEA 292
P D TP+ R+PP +S + TTRRR P P GA A
Sbjct: 11 PFRDLSNLRTPNPRAPPNPKSSASKEEPLPSATPTTRRRRGPPPPPRPGAATA 63
>02_05_0665 -
30720842-30721003,30721290-30721448,30721555-30721687,
30722042-30722227,30722377-30722906
Length = 389
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -2
Query: 452 AXVSD*SDRSTVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 312
A S S + R +AGSG S +P P+ RP L GR
Sbjct: 4 AAASSPSPEQPLLRPSAARAGSGSGNLSSSPPPPAARPSRLAALIGR 50
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = +3
Query: 183 PLRGQNPDEVGGLPRSTLQ-PDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCR 359
P + P+E P S + P AHP P+E S E+S + + PP
Sbjct: 770 PPKSSPPEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPSGHE 829
Query: 360 WCPGIPRWTRTSLPGRDA 413
P P ++S P +A
Sbjct: 830 GTPPSP--VKSSSPPPEA 845
>08_02_1035 - 23840606-23841109,23841194-23841199
Length = 169
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 204 PGSDLGGDRTSGVRVXGESFSGWVLKSLG 118
PG+ GG+RT G V E++ V +LG
Sbjct: 35 PGAGAGGERTGGSAVGAEAWGDGVAAALG 63
>03_06_0199 + 32310272-32311432
Length = 386
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 81 SHIPRAPLLRGDLVGGSALYPKKKKK 4
S PR PLLRG + GGSA + + +K
Sbjct: 203 SREPRVPLLRGGIRGGSAAHLQDGQK 228
>03_03_0164 - 14979364-14979479,14979613-14980102
Length = 201
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 189 RGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIE-GSETSAVSVRQPVGPPRRCR 359
RG+ G +T+ DG+ H + P P R + G E V+ P G RR R
Sbjct: 83 RGRRRQRRGPGTATTMLEDGSIHTQRGSPPLPPRSGQRGGEEGEVAAAAPGGGGRRWR 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,800,515
Number of Sequences: 37544
Number of extensions: 370550
Number of successful extensions: 1481
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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