Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_B24
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   144   1e-35
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   139   4e-34
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.5  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   2.0  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   6.0  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  144 bits (350), Expect = 1e-35
 Identities = 79/156 (50%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
 Frame = -2

Query: 823 GXXWEXLXWLLVLX*PSRTPXMVCHXXTALRSACCXEVCRAHR-CYAYCGTFHTRCFTNQ 647
           G  WE L     +      P  VC   T            AH    A  G F    FTN 
Sbjct: 54  GKTWEKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNY 113

Query: 646 IQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 467
           I   +REPRL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SI
Sbjct: 114 ITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSI 173

Query: 466 GLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 359
           GL+W+LLAREVLR+RG L R   WDV+ DL+FYRDP
Sbjct: 174 GLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  139 bits (337), Expect = 4e-34
 Identities = 68/110 (61%), Positives = 78/110 (70%)
 Frame = -2

Query: 688 AYCGTFHTRCFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFV 509
           A  G F    FTN I   +REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  V
Sbjct: 101 AIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHV 160

Query: 508 DIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 359
           D+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FYRDP
Sbjct: 161 DVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210



 Score = 55.6 bits (128), Expect = 9e-09
 Identities = 25/31 (80%), Positives = 26/31 (83%)
 Frame = -3

Query: 753 VXSXRPFGQRAVXKFAAHTGATPIAGRFTPG 661
           V S RP+G RAV KFAAHTGAT IAGRFTPG
Sbjct: 79  VISSRPYGHRAVLKFAAHTGATAIAGRFTPG 109


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -2

Query: 625 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 446
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 445 AR 440
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 577 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 467
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 423 VVCFPVTSAGMLWLICSSTVTPEESEKD 340
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 469 IGLMWWLLAREVLRLRGVLPRDQRWD 392
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,258
Number of Sequences: 5004
Number of extensions: 58749
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)