Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_B23
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 130 2e-31
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 126 3e-30
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 40 3e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 30 0.46
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.8
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 26 5.6
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.6
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 130 bits (314), Expect = 2e-31
Identities = 61/92 (66%), Positives = 71/92 (77%)
Frame = -3
Query: 629 FREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 450
+RE RL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W
Sbjct: 118 YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIW 177
Query: 449 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 354
+LLAREVLR+RG L R WDV+ DL+FYRDP
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209
Score = 58.0 bits (134), Expect = 2e-09
Identities = 31/66 (46%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -2
Query: 822 LXLTWEKXFWLXGXXXHXE-PR*XFXIXSRPFGQRAVMKFXAHTGXTPIAGRFTPGAFTN 646
L TWEK E P + +R +G RAV+KF AHTG T IAGRFTPG FTN
Sbjct: 53 LGKTWEKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTN 112
Query: 645 QIQAAF 628
I +
Sbjct: 113 YITRTY 118
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 126 bits (305), Expect = 3e-30
Identities = 60/92 (65%), Positives = 70/92 (76%)
Frame = -3
Query: 629 FREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 450
+RE RL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W
Sbjct: 119 YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAW 178
Query: 449 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 354
+LLAREVLRLRG + R W+V+ DL+FYRDP
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210
Score = 62.9 bits (146), Expect = 5e-11
Identities = 34/66 (51%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = -2
Query: 822 LXLTWEKXFWLXGXXXHXE-PR*XFXIXSRPFGQRAVMKFXAHTGXTPIAGRFTPGAFTN 646
L TWEK E P I SRP+G RAV+KF AHTG T IAGRFTPG FTN
Sbjct: 54 LGKTWEKLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTN 113
Query: 645 QIQAAF 628
I +
Sbjct: 114 YITRTY 119
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 40.3 bits (90), Expect = 3e-04
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = -3
Query: 656 LLLTRSKLHFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 477
L+ T K + L+++L+P ++ EA ++P I + +TD+ R V IP N
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227
Query: 476 SSHSIGLMWWLLAR 435
S L+ LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.46
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 349 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 468
L S+ N+S+T +++ SR ST RS STS AN H K E
Sbjct: 99 LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 572 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 462
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 418 VVCFPVTSAGMLWLICSSTVTPEESEKD 335
V+ FP TS+G LI S + PEE KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 26.2 bits (55), Expect = 5.6
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -3
Query: 674 DVSHQVLLLTRSKLHFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 501
+ + ++ L HF +LL+VL H T Y I I NT+ LRF D
Sbjct: 249 ETAQKIFLSLCFSQHFPSEKLLMVL---LLHGTETMQEYAMIQAINFVNTEQKLRFYD 303
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,349
Number of Sequences: 5004
Number of extensions: 53003
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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