Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_B22
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    27   0.15 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   3.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.8  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 553 KTLGVSYGGSFFVCQREXXXXXXXXXXXXMQSIISSWANTESTGIG 690
           KTLG S G    +C  E            +Q++ ++W   E   IG
Sbjct: 104 KTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVXNNWLLLEGHSIG 149


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 711 GPENXWRTYPCR 676
           GPE+ ++TY CR
Sbjct: 171 GPEDGYKTYQCR 182


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 390 IVFNNFAILFVDSLVQYDRFS 452
           I+ N F  L+ +SLV++ RF+
Sbjct: 17  ILINYFIFLYFNSLVRFRRFT 37


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 415 RMAKLLKTMHLLSMICLRNPLHRWE 341
           R+AKLL  + LL +  L   + +WE
Sbjct: 209 RLAKLLSLVRLLRLSRLVRYVSQWE 233


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 415 RMAKLLKTMHLLSMICLRNPLHRWE 341
           R+AKLL  + LL +  L   + +WE
Sbjct: 209 RLAKLLSLVRLLRLSRLVRYVSQWE 233


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 415 RMAKLLKTMHLLSMICLRNPLHRWE 341
           R+AKLL  + LL +  L   + +WE
Sbjct: 209 RLAKLLSLVRLLRLSRLVRYVSQWE 233


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 226 LFVCTRRDFLRVMIRFL 276
           ++ C  RDF R  +R L
Sbjct: 389 IYACWSRDFRRAFVRIL 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,031
Number of Sequences: 438
Number of extensions: 4911
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)