Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_B19
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.16 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.6  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   2.6  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   7.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 26/101 (25%), Positives = 28/101 (27%)
 Frame = +3

Query: 351 PXXPPPXAXQHXRXGPRVXAXLHXPPPPRXXXLPXPXXXLPPPNNXRPTSXXPHPSXXPX 530
           P  PPP         P        PPPP     P      PP ++ R  S  P P     
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396

Query: 531 XRVLALXXXXXPPXSPXAXPXXXXSXXGAPXPPRXPPXXXP 653
            R          P  P        S    P PP  PP   P
Sbjct: 397 GR--------SAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 29/113 (25%), Positives = 34/113 (30%), Gaps = 17/113 (15%)
 Frame = +3

Query: 351 PXXPPPXAXQHXRXGPRVXAX--LHXPPPPRXXXLPXPXXXLPPPNNXRPTSXXP----- 509
           P  PP  A    R  P + +   +  PP P           LPP  N   TS  P     
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421

Query: 510 ----------HPSXXPXXRVLALXXXXXPPXSPXAXPXXXXSXXGAPXPPRXP 638
                      PS  P   + A      PP +P A P         P PP  P
Sbjct: 422 SLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 26/113 (23%), Positives = 31/113 (27%), Gaps = 6/113 (5%)
 Frame = +3

Query: 345  PCPXXPPPXAXQHXRXGPRVXAXLHXPPPPRXXX----LPXPXXX--LPPPNNXRPTSXX 506
            P P   PP         P V      PP P+       +P P     +P P+   P    
Sbjct: 1115 PAPSGAPPVPKPSVA-APPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPA 1173

Query: 507  PHPSXXPXXRVLALXXXXXPPXSPXAXPXXXXSXXGAPXPPRXPPXXXPXXXL 665
            P     P  +  A      PP      P         P P   PP   P   L
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGL 1226


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/70 (28%), Positives = 21/70 (30%)
 Frame = +3

Query: 429 PPRXXXLPXPXXXLPPPNNXRPTSXXPHPSXXPXXRVLALXXXXXPPXSPXAXPXXXXSX 608
           PP     P P   L PP     TS  P PS  P     A       P  P + P      
Sbjct: 124 PPSAPAPPTPQSELRPP-----TSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPA 178

Query: 609 XGAPXPPRXP 638
                PP  P
Sbjct: 179 APVKSPPSAP 188



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 29/117 (24%), Positives = 35/117 (29%), Gaps = 7/117 (5%)
 Frame = +1

Query: 307 EAPERRGWRAAXXLAPXXHPPXPHSTPXXAXXSXPPXTXRXPPAAXAXLXLXXXSHXXTT 486
           +A ER    A   L     P   H     A  S  P +   PP   + L     +    +
Sbjct: 91  QAEERPSMPALGGLFAGGMPKLRHIGKSSA--SAAPPSAPAPPTPQSELRPPTSAPPRPS 148

Query: 487 XAPPPPXLTXPXXRXVECXPXXXXX-AXPHRPX------PXLXXXXPPRXPRXPPXP 636
             PP P    P        P      A P  P       P L    PP  P+ PP P
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
 Frame = -2

Query: 526 GXXXG*GLXEVGRXLXGGGXXXXGKGRXXXRGGG-GXXRXAXTRGPXRXCCXAXGGGXXG 350
           G   G G    GR    GG    G GR   RGGG G  R    RG         GG   G
Sbjct: 6   GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGG--RGGRGGARGGRGGSSGG 63

Query: 349 QG 344
           +G
Sbjct: 64  RG 65


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 318 LRSLISNLSNTCDLTPLPEWSCEQSAW 238
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,831
Number of Sequences: 5004
Number of extensions: 20509
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)