Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_B18
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.5  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   3.3  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   5.8  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    26   7.7  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 110 ATSSGLSPVSSPTKVRV-TLTIASQGSQLR*EKKKKK 3
           ATSS +SP S    + + T+ + S  S  R +KKKKK
Sbjct: 156 ATSSNMSPNSVQNNMNLNTVALGSSTSSKRKKKKKKK 192


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 668 MGSVXXREEXADMRATLDGVVGRQSSLIFAIPVRRHSGRKK 546
           +G V  +       AT  GVVGR++S+  A+  RR S  +K
Sbjct: 558 LGEVESKSVPPTNMATERGVVGRRASMSIAVNARRVSKPEK 598


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 257 NPSLATKGSTIKLTPRHSPLSFSPD--LLSGSRFRS 156
           N +L T  +T+KL P    L  SPD  LL G++ R+
Sbjct: 333 NNNLYTFDATLKLLPSDRELPLSPDQLLLRGAQLRN 368


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 272 SPFSSNPSL-ATKGSTIKLTPRHSPLSFSPDLLS 174
           +P S  P     KG+ IKL P  SPLS +  LL+
Sbjct: 151 NPRSEQPHTPCKKGTKIKLKPPQSPLSPTTSLLA 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,895
Number of Sequences: 5004
Number of extensions: 51098
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)