Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_B18
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical pr...    30   1.8  

>U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical
           protein T09B4.5a protein.
          Length = 327

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = -3

Query: 344 PSPKTRHLGSSRSTNGASRYFKHRSPFSSNPSLATKGSTIKLTPRHSPLSFSPDLLSGSR 165
           PSP      +S+S   A      ++P  S    AT+G T   TP+ +P        + SR
Sbjct: 32  PSPAKSARKASKSPARARTSNVKKTPSRSASKSATRGRTASKTPK-TPSKTPSSASARSR 90

Query: 164 FRSGGRFCEA-RLLLGFVLATSSGLSPVSSPTK 69
            RS GR   A RL      A+S+ +    S TK
Sbjct: 91  SRSRGRPTNASRLSASTPSASSTSVKRSRSVTK 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,760,909
Number of Sequences: 27780
Number of extensions: 314029
Number of successful extensions: 713
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)