Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_B12
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    32   0.12 
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    27   3.5  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   4.6  

>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
 Frame = -2

Query: 570 VKALAAADPPRARSLAEQLPPLDQLETKIDIDALESSKWMMGAKV--VKKTVQSKQEQSP 397
           V AL   D      + + L P   L T ID+D +E     + A +  +K++V++    S 
Sbjct: 454 VAALCYLDKEIESGMDKYLVPTKDLITGIDVDDIEIRGVPVSAAIGPIKRSVEANSSNSS 513

Query: 396 GTPGSELGQXXXXXXXXXXKLPPNADLSKPPDPERWLPKYERT 268
                                P + +    PDP+RW+PK +RT
Sbjct: 514 KKTRKR-----------RKPTPKSFNPKATPDPQRWIPKRDRT 545


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 209 DIPWLPLMTSRLMPRRFLYAVRSYFGNHLSGSGG 310
           D+PW P   SR+  +    A RS FG +++   G
Sbjct: 140 DLPWTPTQLSRIARQGSGSACRSLFGGYVAWEMG 173


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 23/92 (25%), Positives = 38/92 (41%)
 Frame = -3

Query: 479 LTPWNRRNG*WELKSSRRLFKASRNNLPELPALSWDRRRKRNASATANSRRTQTSPNLPI 300
           L P N+++    +KSS  L KAS+  + +L A         +A  + N+    TS N+ +
Sbjct: 514 LNPVNQKSHSPAIKSSSTLRKASKTRIVDLSA-------PNSAVFSKNASGGDTSSNVSL 566

Query: 299 RKGGCQSTSELRTESDEALDVTSSRVAKECPP 204
             G         TES +        + +E  P
Sbjct: 567 LNGSASEEIPQNTESGQVFRKKIEMLRQEAGP 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,238
Number of Sequences: 5004
Number of extensions: 30949
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)