Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_B12
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452... 59 4e-09
03_05_0690 + 26778567-26778804,26778950-26779024,26779995-267800... 34 0.13
10_08_1066 + 22666109-22666302,22668316-22668919 32 0.52
03_06_0212 + 32400982-32402055 31 0.90
01_06_1625 + 38729803-38731115,38731202-38731391,38731472-387315... 31 1.6
04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798 30 2.1
09_04_0078 + 14379720-14379786,14379903-14379974,14381093-143814... 29 3.6
06_03_0857 + 25443251-25444429 29 4.8
02_05_0686 - 30900748-30902167,30903442-30904742 29 4.8
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 29 4.8
12_02_0299 - 17051570-17052474,17053542-17053755 29 6.4
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 29 6.4
07_03_1136 + 24218601-24218734,24218769-24219906 29 6.4
>01_06_1613 +
38643833-38643974,38644054-38644190,38644828-38645207,
38645487-38645583,38645685-38645972,38646683-38647648
Length = 669
Score = 59.3 bits (137), Expect = 4e-09
Identities = 39/128 (30%), Positives = 65/128 (50%)
Frame = -2
Query: 597 GNARSLARLVKALAAADPPRARSLAEQLPPLDQLETKIDIDALESSKWMMGAKVVKKTVQ 418
G+A +LA LV A + +A ++L PL L+ I++++LE + GA+ +
Sbjct: 504 GSAEALAGLVATSARTNLEKAEQYEKKLKPLPGLKG-INVESLEKTS---GARPFEAPKP 559
Query: 417 SKQEQSPGTPGSELGQXXXXXXXXXXKLPPNADLSKPPDPERWLPKYERTAYRKRRGIRR 238
+Q+ + + + P N PPDPERWLPK ER++YR +R +R
Sbjct: 560 MEQDVTDEVKKQKAKKRKRKPRYPKGFDPANP--GPPPDPERWLPKRERSSYRPKRKDKR 617
Query: 237 DVIKGSQG 214
++G+QG
Sbjct: 618 AQVRGAQG 625
>03_05_0690 +
26778567-26778804,26778950-26779024,26779995-26780099,
26780869-26781000,26781432-26781571,26782213-26782323,
26782690-26782812,26784166-26784267,26784536-26784546,
26784878-26785103,26785363-26785401,26785413-26785583,
26785674-26785753,26785976-26786039
Length = 538
Score = 34.3 bits (75), Expect = 0.13
Identities = 23/59 (38%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = -2
Query: 720 GXGXXXXXGXXXGXXXXXXGXXGAXGXGGARAXGXXGRGXPGNAR--SLARLVKALAAA 550
G G G G G G G GG R G G G PG R S AR +A AAA
Sbjct: 5 GKGRHRGRGGGGGGGGGGGGGGGGGGVGGDRGGGGSGGGGPGMGRRGSDARAQQAAAAA 63
>10_08_1066 + 22666109-22666302,22668316-22668919
Length = 265
Score = 32.3 bits (70), Expect = 0.52
Identities = 23/86 (26%), Positives = 31/86 (36%)
Frame = -2
Query: 663 GXXGAXGXGGARAXGXXGRGXPGNARSLARLVKALAAADPPRARSLAEQLPPLDQLETKI 484
G G GG G GRG G L KA + D A SL E P ++
Sbjct: 2 GRRHGGGGGGGGGRGRGGRGRGGGEEDDLHLHKAARSGDLAAAESLCEANPLALNSRDRL 61
Query: 483 DIDALESSKWMMGAKVVKKTVQSKQE 406
L + W ++VK + K +
Sbjct: 62 SRTPLHLAAWAGHVELVKCLCKHKAD 87
>03_06_0212 + 32400982-32402055
Length = 357
Score = 31.5 bits (68), Expect = 0.90
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -3
Query: 407 NNLPELPALSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRTESDEALDVTSS 228
+ LP L ++ A A RR+Q K GC STSE SD+ + V S+
Sbjct: 108 DTLPSLDPAAFAAIPHAAADAAPTRRRSQQQQQQLSNKSGCSSTSETSKGSDKEVTVASA 167
>01_06_1625 +
38729803-38731115,38731202-38731391,38731472-38731504,
38731582-38732199,38732304-38733011
Length = 953
Score = 30.7 bits (66), Expect = 1.6
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = -2
Query: 633 ARAXGXXGRGXPGNARSLARLVKALAAADPPRARSLAEQLPPLDQ--LETKIDIDALESS 460
ARA G A +L K LAAA P A+SLA+ + + L K A+E+S
Sbjct: 176 ARARAASDAGDQALAVALLSRSKPLAAASPEGAKSLAQGYLSIGEATLAAKHSNPAVEAS 235
Query: 459 KWMMGAKVVKKTVQSKQEQSPGTP 388
A + + S SP TP
Sbjct: 236 TLFTEALDLCEKAASPSSSSPRTP 259
>04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798
Length = 273
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 163 AYPGDLCQESPGRSQADRERLAAQATAEEERQG 65
A P D+ SP RS+ +ER+AA A E G
Sbjct: 128 AEPADVVTGSPNRSETGQERVAADRPASSESSG 160
>09_04_0078 +
14379720-14379786,14379903-14379974,14381093-14381497,
14382835-14382911,14383016-14383135,14383227-14383997,
14384933-14385146,14385269-14385735
Length = 730
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -3
Query: 383 LSWDRRRKRNASATANSR-RTQTSPNLPIR-KGGCQSTSELRTESDEALDVTSSRVAKEC 210
+ WD RR++ AS N+R R + N P R +GG ++ S++ ++ + T V E
Sbjct: 37 MGWDNRRRKQASTIMNARGRGARNGNGPNRGRGGGRAHSDVVVGANTTVLATRRWVGLEI 96
Query: 209 PPLP 198
+P
Sbjct: 97 DSVP 100
>06_03_0857 + 25443251-25444429
Length = 392
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -2
Query: 630 RAXGXXGRGXPGNARSLARLVKALAAADPPRARSLAEQLPP 508
RA G GRG R +R +A AAA P S A PP
Sbjct: 194 RARGPRGRGGGARGRGRSRRRRAAAAAAPSAPASEAPPPPP 234
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/58 (31%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Frame = +2
Query: 596 PGXPRPXXPXARAPPXPXAP--XXPXXXXXXPXXXPXXXXXPXPXSXLXGSPXXSXXP 763
P P P P A APP P P P P P P P SP P
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370
>02_05_0101 -
25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/62 (29%), Positives = 21/62 (33%)
Frame = -3
Query: 380 SWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRTESDEALDVTSSRVAKECPPL 201
SW RRR R SRR + GGC + R E V V P+
Sbjct: 126 SWRRRRSRTRQRRRRSRRRRRRRRTCGGGGGCGRGGDARGRPTELAKVVDGAVTPSLVPV 185
Query: 200 PR 195
R
Sbjct: 186 DR 187
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = +2
Query: 596 PGXPRPXXPXARAPPXPXAPXXPXXXXXXPXXXPXXXXXPXP 721
P P P P +PP P P P P P P P
Sbjct: 273 PAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQLPPLPHFPPLP 314
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 596 PGXPRPXXPXARAPPXPXAPXXP 664
PG RP P R PP P P P
Sbjct: 425 PGLARPRKPLGRRPPGPARPGKP 447
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 596 PGXPRPXXPXARAPPXPXAPXXP 664
PG RP P R PP P P P
Sbjct: 439 PGPARPGKPLGRRPPGPARPGKP 461
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/58 (31%), Positives = 18/58 (31%)
Frame = -2
Query: 762 GXXXXXGXPXRXDXGXGXXXXXGXXXGXXXXXXGXXGAXGXGGARAXGXXGRGXPGNA 589
G G P R G G G G G G G GGA G G G A
Sbjct: 174 GGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGGGGGEGGAPERVIGGGGGGGGA 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,553,839
Number of Sequences: 37544
Number of extensions: 287411
Number of successful extensions: 1412
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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