Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_B12
         (868 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80840-12|AAB37925.1|  694|Caenorhabditis elegans Hypothetical p...    75   5e-14
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    31   0.81 
AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical ...    30   2.5  
Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   5.7  
U00050-10|AAA50701.1|  153|Caenorhabditis elegans Myosin light c...    28   9.9  
L03412-1|AAA28112.1|  153|Caenorhabditis elegans alkali myosin l...    28   9.9  

>U80840-12|AAB37925.1|  694|Caenorhabditis elegans Hypothetical
           protein F08D12.1 protein.
          Length = 694

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
 Frame = -2

Query: 600 PGNARSLARLVKALAAADPPRARSLAEQLPPLDQLETKIDIDALESSKWMMGAKVVKKTV 421
           P + +   RLV A +  DP +A SL+ +L P + +E  +++D LE S W++  +  ++  
Sbjct: 519 PEDLQLQCRLVGAYSKTDPKKAESLSAKLFP-ETMEVDVNVDELEDSDWILYGEKYRQKK 577

Query: 420 QSKQEQSPGTPGSELGQXXXXXXXXXXKLPPNADLSKPPDPERWLPKYERTAY-RKRRGI 244
           ++K  Q+     +   +           LP N + +  PDPERWLP+ ER+ Y RKR+  
Sbjct: 578 EAKSPQTAEIAATRKLKIATKRKRKIR-LPKNYNSAVTPDPERWLPRQERSTYKRKRKNR 636

Query: 243 RRDVIKGSQGMST 205
            R++ +G+QG S+
Sbjct: 637 EREIGRGTQGSSS 649


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = -2

Query: 720 GXGXXXXXGXXXGXXXXXXGXXGAXGXGGARAXGXXGRGXPGNAR 586
           G G     G   G      G  G  G GG R  G  GRG  G  R
Sbjct: 91  GGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGGGGRGR 135



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = -2

Query: 744 GXPXRXDXGXGXXXXXGXXXGXXXXXXGXXGAXGXGGARAXGXXGRG 604
           G   R   G G     G   G      G  G  G GG R  G  GRG
Sbjct: 90  GGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGGGGRGRG 136


>AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical
           protein Y106G6D.3 protein.
          Length = 555

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = -3

Query: 395 ELPALSWDRRRKRNASATANSRRT---QTSPNLPIRKGGCQSTSELRTESDEALDVTSSR 225
           E  A +W RRR+        +R+T   + +  +P +K    S    R+  +      SSR
Sbjct: 247 EAEAPNWRRRRRAKEDQNVKARKTKKVKKNEEVPSKKSSKMSKRSKRSTDENLETAKSSR 306

Query: 224 VAKECPP 204
           + K+  P
Sbjct: 307 ILKDSEP 313


>Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical
           protein B0379.7 protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = -3

Query: 446 ELKSSRRLFKASRNNLPELPALSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSEL 267
           E K S+++ K  +N   +    S  R+ K+N  +   S  T   P     + G Q+ +EL
Sbjct: 211 ESKKSKKI-KKKKNKKSKDKKKSNSRKNKKNKKSKGKSTSTSEPPTPNQPETGVQTANEL 269

Query: 266 RTESDEA 246
           R ++ E+
Sbjct: 270 RNDAPES 276


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 22/76 (28%), Positives = 35/76 (46%)
 Frame = -3

Query: 440 KSSRRLFKASRNNLPELPALSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRT 261
           KSSR+  K S+ +  E  + S D R   + S       T +S       GG  STSE  +
Sbjct: 675 KSSRKRSKKSKKS-NETSSSSSDERLIHSQSPPTPQNTTSSSDVSSSSSGGSASTSESSS 733

Query: 260 ESDEALDVTSSRVAKE 213
            +  A  V++ + +K+
Sbjct: 734 SAPSAEQVSTPKKSKK 749


>U00050-10|AAA50701.1|  153|Caenorhabditis elegans Myosin light
           chain protein 3, isoforma protein.
          Length = 153

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 297 ERWLPKYERTAYRKRRGIRRDVIKG 223
           E WLP YE+ A  K +G   D  +G
Sbjct: 64  EEWLPMYEQLAKEKEQGTYADFYEG 88


>L03412-1|AAA28112.1|  153|Caenorhabditis elegans alkali myosin
           light chain protein.
          Length = 153

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 297 ERWLPKYERTAYRKRRGIRRDVIKG 223
           E WLP YE+ A  K +G   D  +G
Sbjct: 64  EEWLPMYEQLAKEKEQGTYADFYEG 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,978,746
Number of Sequences: 27780
Number of extensions: 202389
Number of successful extensions: 887
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)