Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_B08
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    31   0.80 
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    30   2.4  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 21/76 (27%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
 Frame = +3

Query: 564  PGEXGXXXXPPVPGPPLXQXXXXXXXXSXXXXPXWPWPPPXPXSXXSHXXXXXXPRXXXX 743
            PGE G    PP P PP  +                P PPP P +   +      P     
Sbjct: 1053 PGEVGGAPSPPSPPPPQRENTSVGIQGGIP-----PLPPPLPPTLGDYGVAPPPPSIGAG 1107

Query: 744  VXPXXPVSGXL--VPP 785
              P  P  G +  VPP
Sbjct: 1108 APPPPPPPGGITGVPP 1123


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/71 (26%), Positives = 21/71 (29%)
 Frame = +3

Query: 570 EXGXXXXPPVPGPPLXQXXXXXXXXSXXXXPXWPWPPPXPXSXXSHXXXXXXPRXXXXVX 749
           E G    PP P PP           S    P  P PPP P    +       P       
Sbjct: 197 EAGPSTLPPPPPPPPLPASSEPVDPSAASLPPLPPPPPPPPKPANIAGAPGLPLPPPPPP 256

Query: 750 PXXPVSGXLVP 782
           P  P    +VP
Sbjct: 257 PPGPPPREIVP 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,503,276
Number of Sequences: 37544
Number of extensions: 198647
Number of successful extensions: 657
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)