Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_B08
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    30   1.7  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    30   1.7  
Z83114-7|CAJ76943.1|  525|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z83114-6|CAB63235.1|  589|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical
           protein F02D10.1 protein.
          Length = 316

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = -3

Query: 691 WGXGGGQGQXGXXXXLXXXXXXXXCXRGGPGTGGXXXXPXSPG 563
           +G GGG G  G             C  G PG GG    P +PG
Sbjct: 93  YGAGGGGGGGGGEAAGGGGGCTGCCNPGPPGPGGRPGKPGTPG 135


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 510 WWSTGGRQXXPXXAXXXPPGEXGXXXXPPVPGPPL 614
           W+ +GG    P      PPG  G    PP P PP+
Sbjct: 650 WYGSGGGSSMPMPVP--PPGGLGGFMPPPPPPPPM 682


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 510 WWSTGGRQXXPXXAXXXPPGEXGXXXXPPVPGPPL 614
           W+ +GG    P      PPG  G    PP P PP+
Sbjct: 650 WYGSGGGSSMPMPVP--PPGGLGGFMPPPPPPPPM 682


>Z83114-7|CAJ76943.1|  525|Caenorhabditis elegans Hypothetical
           protein K09B11.5b protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/49 (30%), Positives = 16/49 (32%)
 Frame = +3

Query: 561 PPGEXGXXXXPPVPGPPLXQXXXXXXXXSXXXXPXWPWPPPXPXSXXSH 707
           PP        PPV  PP+ Q        S    P  P  PP   S   H
Sbjct: 475 PPVSQPPVSQPPVSQPPVSQPPVSQPPVSQPPVPQHPMTPPPASSARPH 523


>Z83114-6|CAB63235.1|  589|Caenorhabditis elegans Hypothetical
           protein K09B11.5a protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/49 (30%), Positives = 16/49 (32%)
 Frame = +3

Query: 561 PPGEXGXXXXPPVPGPPLXQXXXXXXXXSXXXXPXWPWPPPXPXSXXSH 707
           PP        PPV  PP+ Q        S    P  P  PP   S   H
Sbjct: 539 PPVSQPPVSQPPVSQPPVSQPPVSQPPVSQPPVPQHPMTPPPASSARPH 587


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,973,682
Number of Sequences: 27780
Number of extensions: 135695
Number of successful extensions: 794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)