Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_B04
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0080 + 587674-588510 30 1.9
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 30 2.5
03_01_0515 - 3864796-3865425 29 3.3
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 4.4
03_01_0023 + 198414-198968 29 4.4
12_02_0299 - 17051570-17052474,17053542-17053755 29 5.8
08_01_0059 - 394001-394708 29 5.8
07_03_0890 - 22332768-22333382 28 7.7
06_01_0178 + 1386981-1387505 28 7.7
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 28 7.7
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 28 7.7
>07_01_0080 + 587674-588510
Length = 278
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 639 YXRXPNXXPPPXSXXLNPPXXXXXPPXPRIPP 734
+ R P PPP S PP PP P PP
Sbjct: 88 FRRPPPPPPPPPSSGSPPPPPPPPPPPPPPPP 119
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +3
Query: 645 RXPNXXPPPXSXXLNPPXXXXXPPXPRIPP 734
+ P PPP L PP PP P PP
Sbjct: 41 KCPRFAPPPPQPTLPPPPPRTLPPPPPPPP 70
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/50 (30%), Positives = 18/50 (36%)
Frame = +2
Query: 662 PXAXXLXP*PXXXXXXPPPXPDPXXXXXPXXXXXIPXXPXPPSXTPXXNP 811
P P P PPP P P P +P P PP+ +P P
Sbjct: 55 PSVTSSPPPPAAGPLMPPPPPPPSVTSSP-PPPPLPPPPPPPAASPPPPP 103
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +3
Query: 651 PNXXPPPXSXXLNPPXXXXXPPXPRIPPXXXXXXXTXXSXXPXXPP 788
P PPP N P PP P PP S P PP
Sbjct: 545 PPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPP 590
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +2
Query: 710 PPPXPDPXXXXXPXXXXXIPXXPXPPSXTPXXN 808
PPP P P P P P PP P N
Sbjct: 547 PPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSN 579
>03_01_0023 + 198414-198968
Length = 184
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -1
Query: 813 GGXXXGVXEGGXGXXGMXXXXXGXXXXXGSGXGGGXCXXXXG*GXR 676
GG G GG G G G GSG GGG G G R
Sbjct: 54 GGGGSGGGSGGGGGSGGGGSGGGGSGGGGSGGGGGGGSGGGGGGGR 99
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = +2
Query: 584 PXXPPXXXXGXXFXQXIXLPSXXQLXPXAXXLXP*PXXXXXXPPPXPDPXXXXXPXXXXX 763
P PP F Q LP P P P PPP P P
Sbjct: 289 PPPPPPPAFPFPFPQLPPLPHF----PPLPSFYPSPPPPPPPPPPPPPSFPWPFPPLAPL 344
Query: 764 IPXXPXPP 787
P P PP
Sbjct: 345 FPPYPSPP 352
>08_01_0059 - 394001-394708
Length = 235
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 663 PPPXSXXLNPPXXXXXPPXPRIPP 734
PPP S L PP PP P PP
Sbjct: 45 PPPPSHPLAPPPPHISPPAPVPPP 68
>07_03_0890 - 22332768-22333382
Length = 204
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +2
Query: 683 P*PXXXXXXPPPXPDPXXXXXPXXXXXIPXXPXPPSXTP 799
P P PPP P P P P P P + TP
Sbjct: 77 PPPAEATPPPPPPPPPPERAVPEAADTPPPPPPPTAPTP 115
>06_01_0178 + 1386981-1387505
Length = 174
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = -1
Query: 813 GGXXXGVXEGGXGXXGMXXXXXGXXXXXGSGXGGGXCXXXXG*GXRXXAXGXSWXXXGR 637
GG G GG G G G G G GGG G G A G G+
Sbjct: 43 GGGGGGGGGGGAGGKGGKGGAGGHGGAGGGGGGGGGKGRKGGAGGHGGAGGGGGGGGGK 101
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 651 PNXXPPPXSXXLNPPXXXXXPPXPRIPP 734
P PPP S PP PP P PP
Sbjct: 434 PEHPPPPESTSPPPPPTSDPPPVPPPPP 461
>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 710 PPPXPDPXXXXXPXXXXXIPXXPXPPSXTPXXNP 811
PPP P P P IP P P P P
Sbjct: 965 PPPPPPPNVAPPPFTRQDIPPPPPSPPPLPITQP 998
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,977,729
Number of Sequences: 37544
Number of extensions: 220214
Number of successful extensions: 1741
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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