Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_B04
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    28   6.9  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    28   6.9  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    28   9.1  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +3

Query: 651 PNXXPPPXSXXLNPPXXXXXPPXPRIPPXXXXXXXTXXSXXPXXPP 788
           P   PPP    + PP     PP     P       T  S  P  PP
Sbjct: 151 PPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPP 196


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +3

Query: 651 PNXXPPPXSXXLNPPXXXXXPPXPRIPPXXXXXXXTXXSXXPXXPP 788
           P   PPP S  + P      PP P  PP             P  PP
Sbjct: 611 PPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPP 656


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +3

Query: 651 PNXXPPPXSXXLNPPXXXXXPPXPRIPPXXXXXXXTXXSXXPXXPP 788
           P   PPP S  + P      PP P  PP             P  PP
Sbjct: 437 PPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPP 482


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 25/110 (22%), Positives = 29/110 (26%), Gaps = 1/110 (0%)
 Frame = +3

Query: 396 PPPPXAXATXGXRCPXRPXXSTRXLP*YXHERRKPPXXVXXWXAXHAXXPXXXPRXTXRH 575
           PPPP          P  P       P   H    P   +  +       P   P    +H
Sbjct: 51  PPPPAPYPQQAVPAPAPPPA-----PYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQH 105

Query: 576 X-PXPXXXPXXXXXXFSXKXXFYXRXPNXXPPPXSXXLNPPXXXXXPPXP 722
             P P   P             Y + P   PPP      PP     PP P
Sbjct: 106 AVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPPAP 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,022,080
Number of Sequences: 27780
Number of extensions: 128421
Number of successful extensions: 585
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)