Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_B02
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   143   1e-34
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   143   1e-34
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.2  
01_05_0535 - 23001864-23005052                                         29   3.2  
01_06_0867 - 32586254-32586574,32586756-32587172                       29   4.2  
06_03_0543 + 21967787-21970261                                         29   5.5  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.3  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  143 bits (347), Expect = 1e-34
 Identities = 71/138 (51%), Positives = 89/138 (64%)
 Frame = -3

Query: 781 AIXNPXXXXVXSSRPFGQRAVXKFXGHXRXYAYCGTFHTRCFY*PDPSCXSREPRLLIVL 602
           AI NP    V S+RP+GQRAV KF  +   +A  G  HT   +         EPRLLI+ 
Sbjct: 71  AIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGR-HTPGTFTNQLQTSFSEPRLLILT 129

Query: 601 DPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRL 422
           DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++
Sbjct: 130 DPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQM 189

Query: 421 RGVLPRDQRWDVVVDLFF 368
           RG +    +WDV+VDLFF
Sbjct: 190 RGTILPGHKWDVMVDLFF 207


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  143 bits (347), Expect = 1e-34
 Identities = 71/138 (51%), Positives = 90/138 (65%)
 Frame = -3

Query: 781 AIXNPXXXXVXSSRPFGQRAVXKFXGHXRXYAYCGTFHTRCFY*PDPSCXSREPRLLIVL 602
           AI NP    V S+RP+GQRAV KF  +   +A  G  HT   +         EPRLLI+ 
Sbjct: 71  AIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGR-HTPGTFTNQLQTSFSEPRLLILT 129

Query: 601 DPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRL 422
           DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR VL++
Sbjct: 130 DPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQM 189

Query: 421 RGVLPRDQRWDVVVDLFF 368
           RG +    +WDV+VDLFF
Sbjct: 190 RGTILPGHKWDVMVDLFF 207


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>01_05_0535 - 23001864-23005052
          Length = 1062

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = -3

Query: 511 FVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFXP*XLKKV---- 344
           FV +   C+       GL ++    E++   G+LPR + +  V+DL      L K+    
Sbjct: 792 FVSVLSACSHAGLVERGLDYF----ELMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYM 847

Query: 343 KRMNNKPRNRLW 308
           KRM  KP   +W
Sbjct: 848 KRMPMKPNTLIW 859


>01_06_0867 - 32586254-32586574,32586756-32587172
          Length = 245

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +2

Query: 335 HPFHFLQG--SRXEEQINHNIPALVTGKHTTKPQHFTCQQPPHQ-TNRVGRLGVAWDSNV 505
           H    LQG  S  E Q+ +   AL +    T PQHF   QP H   + + ++ V +D   
Sbjct: 138 HQVSLLQGQLSVLESQLFNLRVALASAHPDTPPQHFVVLQPAHSAASTLNQVVVNYDDLP 197

Query: 506 H 508
           H
Sbjct: 198 H 198


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 460 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 371
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,798,255
Number of Sequences: 37544
Number of extensions: 365870
Number of successful extensions: 903
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)