Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_A02
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      35   0.015
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    29   0.57 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.7  
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   2.3  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.3  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   5.3  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   7.0  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = -2

Query: 675 LTDPXXXXWKVTPXHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGE 496
           L D     +K     P+F T +GK+ V IC+         +   NGA+++      +A  
Sbjct: 121 LFDTERKHFKKGSDFPIFETSFGKLGVMICWDTAFPEVARIHALNGADLL-----VVATN 175

Query: 495 GGSEYM--WNVEARNAAITNCYFTAAINRVG 409
             + Y   W++  +  A  NC    A NRVG
Sbjct: 176 WENPYSDDWDLVTKARAFENCIPLVAANRVG 206



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 341 FYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRL-DMYVNSLS 168
           F+G S   GP G     L   ++G++   VDL+  + +R     +   R+ D+Y   LS
Sbjct: 213 FFGHSKIIGPTGKVIKALDEEKEGVISYTVDLDDAKPLRKNYYTFFEDRMPDLYKRLLS 271


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -3

Query: 524 LIRQRRSPEKAAASTCGTLKLGTQLSRTATSQRPSTESAXEEFPNEFTSADGKPAHKDLG 345
           +++   S    + S+ G+    T  S ++ S   S  S        +TSA G  AH   G
Sbjct: 417 IVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSAHSS-G 475

Query: 344 LFYGSS 327
              GSS
Sbjct: 476 SSSGSS 481


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 560  QFKTWCRPKQMFTAILPYLVANTGWXGVTFHXXXXGSVKIADSRKCGSCDASRS 721
            +F T    K +FTA+ P+L A T +  +       G V +   RK   C  SR+
Sbjct: 1521 RFPTRVLCKPVFTAVPPFLFAGTDFALIPSRDEPFGLVAVEFGRKGVLCIGSRT 1574


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 443 FVIAAFLASTFHMYSLPPSPAIVAD 517
           F+ AA  + + H+ S+PPSP +++D
Sbjct: 156 FIDAANSSDSCHLVSIPPSPQLLSD 180


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 449 SRTATSQRPSTESAXEEFPNEFTSADGKPAHKD 351
           S+T  S   S  SA  +FP EF +A    AH +
Sbjct: 256 SQTRRSSWSSIASAFNDFPEEFPNASNPEAHSN 288


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 437 TSQRPSTESAXEEFPNEFTSADGKPAHKDLGLFYGS 330
           +S R  +  A  +F + F+  + KP+ KDL LF+G+
Sbjct: 145 SSSRLLSTDAFSQFISSFSPPE-KPSMKDLALFHGN 179


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 503 PEKAAASTCGTLKLGTQLSRTATSQRPSTESAXEEFPNEF 384
           P +  A T  T KL     + A+ +RP       E P +F
Sbjct: 434 PNRLTAETVDTNKLTASKEQIASPKRPGPSDNGNEIPTKF 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,881
Number of Sequences: 5004
Number of extensions: 52522
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)