Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_A01
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   4.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   4.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   7.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.5  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 340 PPRRCRWCPGIPRWTRTSLPGRDAIHRRPVALFTPR 447
           PPR     PG PR   T L      ++RP   F PR
Sbjct: 138 PPRE----PGTPRINFTKLKRHHPRYKRPRTTFEPR 169



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 214 GYRGQHYNQTARLTPRXAQPTEPSRRIEGSETSAVSVRQP 333
           G+ G H +      P   QPT PS  + G  T+   +R P
Sbjct: 279 GHYGHHPDPGEVDLPPETQPTPPSATLVG--TTITHLRDP 316


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 452 RCRGVNRATGRRCIASRPGRLVLVQ 378
           +CR  +R TG   +++  GRLV+ +
Sbjct: 180 QCRTKHRLTGETRLSATKGRLVITE 204



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 405  PTRQAGSGPAGYSG 364
            P+RQ GSG  G+ G
Sbjct: 1923 PSRQTGSGHGGHGG 1936


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 402 TRQAGSGPAGYSGTPAAPSGRPDGLPY 322
           T +  S P G+      P G+ +G+PY
Sbjct: 588 TFKYSSQPYGFPERLLLPKGKKEGMPY 614


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 402 TRQAGSGPAGYSGTPAAPSGRPDGLPY 322
           T +  S P G+      P G+ +G+PY
Sbjct: 588 TFKYSSQPYGFPERLLLPKGKKEGMPY 614


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -3

Query: 400 PAGWFWSSGVFRDTSGTV 347
           PAGW W    F    G V
Sbjct: 162 PAGWIWGDQGFLKKLGAV 179


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 328 QPVGPPRRCRWCP 366
           +PV PPRR   CP
Sbjct: 336 EPVEPPRRKNNCP 348


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 281 GSVGWAXLGVSRAVWL*C 228
           GS+ W   G    VW+ C
Sbjct: 203 GSIRWELAGTLAVVWIMC 220


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 281 GSVGWAXLGVSRAVWL*C 228
           GS+ W   G    VW+ C
Sbjct: 256 GSIRWELAGTLAVVWIMC 273


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +1

Query: 94  WCCEQTAGP 120
           WCC+   GP
Sbjct: 14  WCCDNLGGP 22


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 362 VPEYPAGPEPACRVGTRY 415
           VP +  G     RVGTRY
Sbjct: 352 VPNWVMGNHDRVRVGTRY 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,900
Number of Sequences: 438
Number of extensions: 3511
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)