Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_P22
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 243 1e-64
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 243 2e-64
10_02_0199 + 6668902-6669293,6669825-6669882 33 0.30
08_02_1278 - 25838146-25839411 32 0.70
03_05_0366 - 23505755-23506441 32 0.70
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.8
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 30 2.8
07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312 29 3.8
12_02_1076 - 25862671-25863159,25863290-25863451,25863614-258638... 29 5.0
05_04_0292 + 19893895-19894983 29 5.0
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 6.6
04_01_0588 + 7657510-7657992,7658397-7658843 28 8.7
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 243 bits (595), Expect = 1e-64
Identities = 117/218 (53%), Positives = 146/218 (66%), Gaps = 1/218 (0%)
Frame = +2
Query: 149 TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRADAR 328
T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRA +R
Sbjct: 20 TDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSR 79
Query: 329 IPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXX 508
IPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 80 IPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPS 139
Query: 509 XXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGK 688
ARGH IE +PELPLV++D + I KT QA+ L+++ A++D K S +R GKGK
Sbjct: 140 LVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGK 199
Query: 689 MRNRRRIQRKGXLIIFNKD-QGLTRAFRNIPGVELLNV 799
MRNRR I RKG LI++ + + +AFRN+PGV++ NV
Sbjct: 200 MRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANV 237
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 243 bits (594), Expect = 2e-64
Identities = 118/222 (53%), Positives = 145/222 (65%), Gaps = 1/222 (0%)
Frame = +2
Query: 137 EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGR 316
E A +P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGR
Sbjct: 15 EGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGR 74
Query: 317 ADARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXX 496
A +RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 75 AVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAAT 134
Query: 497 XXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRA 676
ARGH IE +PE PLVV+D ++ I KT Q++ L+++ A++D K S +RA
Sbjct: 135 AVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRA 194
Query: 677 GKGKMRNRRRIQRKGXLIIFNKD-QGLTRAFRNIPGVELLNV 799
GKGKMRNRR I RKG LI++ + + +AFRN+PGV++ NV
Sbjct: 195 GKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANV 236
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.1 bits (72), Expect = 0.30
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 293 AESWGTGRADARIPRVRGGGTHRSGQGAFGNMCRGGR 403
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>08_02_1278 - 25838146-25839411
Length = 421
Score = 31.9 bits (69), Expect = 0.70
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -1
Query: 622 APQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSSL 515
A +E LF L+D+LD V +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.9 bits (69), Expect = 0.70
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 179 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRADARIPRVRGGGT 355
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 356 HRSGQGA 376
+ + + A
Sbjct: 168 NDNDEEA 174
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 398 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 291
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -3
Query: 371 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 270
P + +HHHGH + Q H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -3
Query: 368 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 270
D +HHH H G H Q QH PP
Sbjct: 32 DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64
>07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312
Length = 133
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 334 RNSGVSTSSTP*FSTG--LVTSLLAHAVGLPRVLGHRNVNIIDQV 206
R+SG+ T F+ L + H +G+ VLG +N+ ++DQ+
Sbjct: 87 RDSGLQTGDPAGFTLADTLACGAVGHIMGVGVVLGLKNIGVLDQI 131
>12_02_1076 -
25862671-25863159,25863290-25863451,25863614-25863838,
25863939-25864037,25864584-25864992,25865094-25865221,
25865955-25866329
Length = 628
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 290 SAESWGTGRADARIPRVRGGGTHRSGQGAFGNMCRGG 400
S+ S G G D+ R GGG RSG G FG GG
Sbjct: 506 SSSSRGGGFGDSGFGR-SGGGFGRSGGGGFGRSSGGG 541
>05_04_0292 + 19893895-19894983
Length = 362
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -3
Query: 209 GPDGWAP*TRTGGAWLHPAPSHSSLNTPTXKGRATDRLISL-L*RSYTSEIYTNSGDKDH 33
G D WAP GG LHP H++ + + R +L + + + KDH
Sbjct: 211 GADSWAPLRVAGGIPLHPGFVHATRSKSELEPRPDSVFFTLDMLDKFLAMALPEGATKDH 270
Query: 32 P 30
P
Sbjct: 271 P 271
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -1
Query: 535 NNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 428
N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +2
Query: 215 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRADARIPRV---RGGGTHRSGQGAFGN 385
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 386 MCRGGRMFAPTKPWRRW 436
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,357,516
Number of Sequences: 37544
Number of extensions: 542547
Number of successful extensions: 1881
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1870
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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