Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_P17
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    31   0.30 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    28   2.1  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    27   2.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.7  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    26   6.4  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +3

Query: 540 SPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLKGVRA 662
           S  IS +ST   N  FH PT    TS S     A  KGV +
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNS 841


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
 Frame = +2

Query: 278 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLIIPVTVDLCWTTADVT 457
           T T   S  +T  +    +S+   Y    + +    +  S P    PVT   C T+  V 
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 458 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 598
                V +TP ++       ++ + +T      Y      P+  +P+  TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
 Frame = +2

Query: 290 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLIIPVTVDLCWTTADVTVE 463
           T +N  T  S+P  S+ +              +V + S P    P+T   C T+  +   
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482

Query: 464 GVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 598
              V +TP ++       ++ + +T      Y      P+  +P+  TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +2

Query: 278 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLIIPVTVDLCWTTA 448
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366

Query: 449 DVTVEGVNVLATPSSS 496
           DV+ E    L+TP  S
Sbjct: 367 DVSDEEQRFLSTPLGS 382


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 525 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGMMR 406
           I A P   +R     AS+ TP+  T+A+ QQ     G+MR
Sbjct: 9   IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 260  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 373
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 537 PSPAISATSTRSSN---PRFHTPTTPD 608
           P P+IS T+T SS       H PTTPD
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPD 299


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +2

Query: 245 IIPFQRLYFDLTGT-ETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLIIPV 421
           I+ FQ +    +G  + K N +   S  +++   + Y+D   ++L  V   +    ++P 
Sbjct: 76  IVNFQNISSANSGEIKQKDNEILFSSTEDINQHKENYQDENKIDLLDVALANPKDCVVPS 135

Query: 422 TVDLCWTTADVTVEGVNVLATPSSSRITI 508
           +  L      ++ E V + AT SS +  +
Sbjct: 136 SGLLMPKEEFISNEEVGIPATNSSEKSNV 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,197,343
Number of Sequences: 5004
Number of extensions: 61348
Number of successful extensions: 234
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)