Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_P17
         (910 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333...    31   0.96 
09_01_0061 + 948663-948708,949638-949993                               31   1.3  
08_02_0875 + 22103903-22106293                                         30   2.2  
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550     30   2.9  
02_04_0452 + 23044190-23045227                                         29   3.9  
04_03_0806 + 19857675-19859135                                         28   8.9  

>01_01_0448 -
           3332238-3332330,3332414-3332481,3332570-3332618,
           3332716-3332798,3332900-3333023,3333389-3333486,
           3333555-3333634,3333712-3333782,3333872-3333953,
           3334158-3334237,3334365-3334416,3334843-3334958
          Length = 331

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +3

Query: 546 AISATSTRSSNPRFHTPTTP 605
           A S+T+TR S PR H PTTP
Sbjct: 2   AASSTATRLSPPRLHAPTTP 21


>09_01_0061 + 948663-948708,949638-949993
          Length = 133

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 29  LCL*XVSAASAIPSLVNAFSSSKPPQTDNPSAR 127
           LC+  VS+    PS  N +SS KPP T  P+ R
Sbjct: 91  LCVIHVSSKDHRPSQDNPYSSDKPPPTSPPAQR 123


>08_02_0875 + 22103903-22106293
          Length = 796

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 537 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLKGVRAGG 668
           P+P ++A S R  NP+      PDL +  +N L A   GV   G
Sbjct: 506 PAPVVAAFSARGPNPQSPEILKPDLIAPGLNILAAWPSGVGPAG 549


>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
          Length = 204

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +3

Query: 528 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINP 632
           I PPSPA +  S+R S +PR  F TP T   T+ S +P
Sbjct: 25  ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSP 62


>02_04_0452 + 23044190-23045227
          Length = 345

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 481 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 603
           H  +L H+      +A SH    SR H P  + P S   PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206


>04_03_0806 + 19857675-19859135
          Length = 486

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 563 NPIIKSPIPYTNHPRLNIHFHQSPERR 643
           NP +  P PY + PRL +H H+   RR
Sbjct: 6   NPPLPLPPPYDSLPRLLLHHHRRLPRR 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,015,356
Number of Sequences: 37544
Number of extensions: 492382
Number of successful extensions: 1407
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)