Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_P17
(910 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00046-6|AAN65305.1| 422|Caenorhabditis elegans Mammalian zak k... 31 1.5
U00046-5|AAC47047.4| 516|Caenorhabditis elegans Mammalian zak k... 31 1.5
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 30 2.0
AL132862-11|CAB60541.1| 396|Caenorhabditis elegans Hypothetical... 29 3.5
Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical pr... 28 8.0
U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone... 28 8.0
AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear recep... 28 8.0
AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear recep... 28 8.0
AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear recep... 28 8.0
>U00046-6|AAN65305.1| 422|Caenorhabditis elegans Mammalian zak
kinase homolog protein1, isoform b protein.
Length = 422
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 223 GTVSSTFDHPFSTPVLRSYWHRNQ 294
G +++ F H S+P LR +WHR Q
Sbjct: 306 GHLNNGFHHTTSSPQLRGFWHRKQ 329
>U00046-5|AAC47047.4| 516|Caenorhabditis elegans Mammalian zak
kinase homolog protein1, isoform a protein.
Length = 516
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 223 GTVSSTFDHPFSTPVLRSYWHRNQ 294
G +++ F H S+P LR +WHR Q
Sbjct: 400 GHLNNGFHHTTSSPQLRGFWHRKQ 423
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 520 PYASSHPPLRSRLHQPDHQIPDS 588
P +S HPPL S H +H PD+
Sbjct: 66 PTSSHHPPLNSSSHHSNHNYPDT 88
>AL132862-11|CAB60541.1| 396|Caenorhabditis elegans Hypothetical
protein Y73F8A.16 protein.
Length = 396
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 358
F L F++TG E KS V + S+ +I GYR+
Sbjct: 37 FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71
>Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical
protein F42G4.3a protein.
Length = 603
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 479 ATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPE-RRTKRS 655
A P SR T+ AL H A GY P ++ + + RL+ Q P+ RT R+
Sbjct: 39 APPKPSRPTVDASALQHAAARLRKTGYNEP-VRGDVENLSDGRLDRPHQQLPDGDRTYRA 97
Query: 656 SRRGLKXP 679
+ + L P
Sbjct: 98 NLQQLAQP 105
>U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform a protein.
Length = 528
Score = 28.3 bits (60), Expect = 8.0
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 514 SRPYASSHPPLRSRLHQPDHQIPDSIHQP-PQT*HPFPSIP*TPY*KEFAPGVKASG 681
S + +++ L S P HQ P S+HQP P + F + P +E AP SG
Sbjct: 33 SSSFFNTNHQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASP-PQSDQETAPTTPGSG 88
>AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 525
Score = 28.3 bits (60), Expect = 8.0
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 514 SRPYASSHPPLRSRLHQPDHQIPDSIHQP-PQT*HPFPSIP*TPY*KEFAPGVKASG 681
S + +++ L S P HQ P S+HQP P + F + P +E AP SG
Sbjct: 30 SSSFFNTNHQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASP-PQSDQETAPTTPGSG 85
>AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 534
Score = 28.3 bits (60), Expect = 8.0
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 514 SRPYASSHPPLRSRLHQPDHQIPDSIHQP-PQT*HPFPSIP*TPY*KEFAPGVKASG 681
S + +++ L S P HQ P S+HQP P + F + P +E AP SG
Sbjct: 39 SSSFFNTNHQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASP-PQSDQETAPTTPGSG 94
>AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 527
Score = 28.3 bits (60), Expect = 8.0
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 514 SRPYASSHPPLRSRLHQPDHQIPDSIHQP-PQT*HPFPSIP*TPY*KEFAPGVKASG 681
S + +++ L S P HQ P S+HQP P + F + P +E AP SG
Sbjct: 32 SSSFFNTNHQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASP-PQSDQETAPTTPGSG 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,028,397
Number of Sequences: 27780
Number of extensions: 358435
Number of successful extensions: 1168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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