Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_P14
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.17
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 32 0.52
07_03_1747 + 29188568-29188715,29188793-29189541 31 0.91
12_01_0524 - 4167867-4168445 29 3.7
07_03_1136 + 24218601-24218734,24218769-24219906 29 4.9
07_03_0923 - 22617627-22617860,22618486-22618542,22618612-226187... 29 4.9
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 29 4.9
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.4
02_04_0400 - 22608519-22608844,22609044-22609122 29 6.4
09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149 28 8.5
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.5
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.5
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.5
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.5
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 343 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 179
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 32.3 bits (70), Expect = 0.52
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = -2
Query: 801 RQGXPXGGRXXGXPXXNTGAGXPGAXXRGRVPGKXXGTLPXELPPRHGPG 652
R G P G G P G G PG G PG G P P PG
Sbjct: 529 RGGFPGGMPGGGFPGGMPGGGFPGGMPGGGFPGGMPGGFPGGAMPGGVPG 578
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = -2
Query: 825 GXGXSXGRRQGXPXGGRXXGXPXXNTGAGXPGAXXRGRVPGK-XXGTLPXELP 670
G G G P GG G P G PG G +PG G +P +P
Sbjct: 525 GASPRGGFPGGMPGGGFPGGMPGGGFPGGMPGGGFPGGMPGGFPGGAMPGGVP 577
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -2
Query: 795 GXPXGGRXXGXPXXNTGAGXPGAXXRGRVPGKXXGTL 685
G P GG G P G PG G +PG G +
Sbjct: 544 GMPGGGFPGGMPGGGFPGGMPGGFPGGAMPGGVPGNV 580
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 31.5 bits (68), Expect = 0.91
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 396 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLGM 551
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G+
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPGL 261
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 340 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 161
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 160 CEERVDHEGQ*C 125
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = -2
Query: 825 GXGXSXGRRQGXPXGGRXXGXPXXNTGAGXPGAXXRGRVPGKXXGTLPXELPPRHGPGXA 646
G G G R P GG G P G G G R PG G P G G
Sbjct: 123 GAGGGGGARPPAPGGGGGGGAPRRVLGGGG-GGGALARPPGGGRGGALGRPPGGGGGGGG 181
Query: 645 P 643
P
Sbjct: 182 P 182
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -3
Query: 857 GPXXXSGPRXXGRGXXXAGGKAXPXXAGAXGXPGXTRAPAXQXXGXGGA 711
GP G R G G GG P G G R PA G GGA
Sbjct: 99 GPLGGGGARPPGGG----GGGGPPSLPPGAGGGGGARPPAPGGGGGGGA 143
>07_03_0923 -
22617627-22617860,22618486-22618542,22618612-22618768,
22618875-22619014,22619642-22619777,22619874-22620142,
22620272-22620492,22620648-22620707,22620859-22620915,
22621008-22621405,22621929-22622000,22622098-22622169,
22622246-22622317,22622574-22622645,22622738-22622867,
22623065-22623170
Length = 750
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +1
Query: 691 SXXLSGDAPPXPXXWXAGARVXPGXPXAPAXXGXALPPAXXXPLPXFRGP 840
S L+G PP A + G P + ALPPA PLP P
Sbjct: 155 SNNLTGPLPPSMGNLTALTSLKDGNPFNTSIAPSALPPAAPTPLPSVSPP 204
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -2
Query: 684 PXELPPRHGPGXAPHWTEPSHPHAP 610
P PP H P PH P HPH P
Sbjct: 34 PHHHPPHHHP-HPPHHHPPHHPHPP 57
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 241 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 357
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Frame = -2
Query: 825 GXGXSXGRRQGXPXGGRXXGXPXXNTGAGXPGAXXRGRVPGKXXGTLP----XELPPRHG 658
G G G G GGR G G G G G G G P PP G
Sbjct: 48 GGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGYYPPWNGGYYPPGPG 107
Query: 657 PGXAPHW 637
PHW
Sbjct: 108 HHHNPHW 114
>09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149
Length = 331
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -3
Query: 803 GGKAXPXXAGAXGXPGXTRAPAXQXXGXGGASPE 702
GG A P G G G +R P G G PE
Sbjct: 268 GGNAPPAYRGGGGGGGGSRPPIYYNGGGGAHEPE 301
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 247 VHRANTGRSSNELDRQTTELERRGVG 324
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 76 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 216
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTP 339
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 422 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 300
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,422,593
Number of Sequences: 37544
Number of extensions: 629255
Number of successful extensions: 2152
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2136
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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