Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_P13
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 292 3e-79
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 286 1e-77
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.0
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.0
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 29 6.0
06_03_0543 + 21967787-21970261 29 6.0
11_06_0695 - 26340161-26340804,26342057-26343429,26344074-263441... 28 7.9
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 7.9
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 7.9
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 7.9
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 292 bits (716), Expect = 3e-79
Identities = 140/258 (54%), Positives = 179/258 (69%), Gaps = 2/258 (0%)
Frame = +3
Query: 54 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 233
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 234 KLVLAARAVVAIENPADVFVISSRPFGQRAVPKFAAHTGATPIAGRFTPGAFTNQIQAAF 413
KL LAAR +VAIENP D+ V S+RP+GQRAV KFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 414 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 593
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 594 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQAVVQLNQK*LLLSMXT 773
LLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++A Q + T
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQDFAAITD-------YT 233
Query: 774 GMKHW--XQWLHGLKIPP 821
+ W QW + PP
Sbjct: 234 APEQWSADQWTSDVAAPP 251
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 286 bits (702), Expect = 1e-77
Identities = 133/216 (61%), Positives = 166/216 (76%)
Frame = +3
Query: 87 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 266
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 267 IENPADVFVISSRPFGQRAVPKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 446
IENP D+ V S+RP+GQRAV KFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 447 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 626
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 627 VLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQAVV 734
+ +WDV+VDLFFYRDPEE++ EQ+ +E A+V
Sbjct: 192 TILPGHKWDVMVDLFFYRDPEEAK--EQEEEEAALV 225
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 154 TFSAPRWVVAASILVTSSSLRASTSNP 74
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 332 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 439
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +3
Query: 6 DFFASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETY 176
++F ++ HY + VT +AT G + ++ L +ED+ K L+A H E + MET+
Sbjct: 245 EWFRNKGHYIKSQVT--AAT--GAIALMQL-QEDLKKHLSAECHYTEEELEAYMETH 296
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 582 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 671
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>11_06_0695 -
26340161-26340804,26342057-26343429,26344074-26344173,
26345230-26345362,26346857-26347258
Length = 883
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 3 LDFFASQWHYTRLVVTQISATMSGGLDV 86
+D F S HYTR ++AT+ GLD+
Sbjct: 388 VDVFYSDQHYTRTREDAVAATLRAGLDL 415
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 336 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 181
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 161 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 268
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +2
Query: 107 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 286
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 287 VRHLITALRSACCTEVCR 340
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,039,258
Number of Sequences: 37544
Number of extensions: 623342
Number of successful extensions: 1778
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1778
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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