Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_P11
         (996 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0606 - 4382133-4382704,4383017-4383336,4384152-4384258,438...    29   5.8  
08_02_0902 - 22408895-22409620,22410190-22410326,22410550-224106...    29   7.6  
04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63...    29   7.6  

>06_01_0606 -
           4382133-4382704,4383017-4383336,4384152-4384258,
           4384339-4384512,4384956-4385204,4386831-4386986
          Length = 525

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 55  QFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPXLQNRSQPD 192
           Q+LL  A    A   +  SL   +DSL     +++PP  Q + +P+
Sbjct: 413 QYLLGDAQGPPASTSDERSLMARVDSLCCLIQKDTPPVAQPKPEPN 458


>08_02_0902 -
           22408895-22409620,22410190-22410326,22410550-22410685,
           22410787-22411224
          Length = 478

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 339 RXRGHHAKWLQPHSHAFQLSRLSIQFI*RSASIRPED 229
           R  GHH + L   S A   SR+S+  +  + ++ PED
Sbjct: 35  RGGGHHQRLLSSSSSASSASRVSLSSLSSTGTLTPED 71


>04_01_0065 -
           636957-637082,637165-637251,637365-637625,637695-638100,
           640036-640223
          Length = 355

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -3

Query: 277 FVDPIHLKICQYPPGGLGLTNVSMSQMQGQVDYDFGVRGETPDRTLRGASRS*GTVMLRF 98
           ++  +H   C   P G G+ N+S+  +    D +    G +PD  L G   +   ++ R 
Sbjct: 6   YLQSLHFN-CIRLPDGAGVVNMSLPIVLAIGDREKEEIGSSPDVALHGPDGAVLAILRRV 64

Query: 97  RILPH 83
            I PH
Sbjct: 65  EIYPH 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,273,385
Number of Sequences: 37544
Number of extensions: 289429
Number of successful extensions: 772
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2916970260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)