Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_P11
(996 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 43 4e-04
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 42 0.001
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 42 0.001
U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated io... 39 0.005
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 38 0.008
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 38 0.008
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 38 0.008
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 38 0.008
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 38 0.008
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 38 0.008
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 38 0.008
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 38 0.008
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 38 0.008
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 37 0.026
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 36 0.045
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 35 0.10
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 35 0.10
Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical pr... 34 0.14
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 34 0.18
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 34 0.18
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 33 0.32
AC024207-2|AAL77193.1| 425|Caenorhabditis elegans Hypothetical ... 32 0.55
AC024207-1|AAL77194.1| 428|Caenorhabditis elegans Hypothetical ... 32 0.55
Z68118-7|CAA92184.2| 573|Caenorhabditis elegans Hypothetical pr... 32 0.73
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 32 0.73
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 32 0.73
AF187013-1|AAG35183.1| 573|Caenorhabditis elegans nicotinic ace... 32 0.73
Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical pr... 31 0.97
AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine... 31 0.97
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 31 1.7
AL110490-4|CAB54450.1| 474|Caenorhabditis elegans Hypothetical ... 31 1.7
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 31 1.7
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 30 2.2
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 30 2.2
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 30 3.0
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 30 3.0
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 29 3.9
U00053-1|AAZ94293.1| 548|Caenorhabditis elegans Acetylcholine r... 29 3.9
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 29 5.2
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 28 9.0
U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine r... 28 9.0
U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine r... 28 9.0
AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine... 28 9.0
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 42.7 bits (96), Expect = 4e-04
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
L +NW+D RLSWN W + P R+ +PD +L+N A
Sbjct: 165 LNINWMDPRLSWNESLWSEIKAIYIPHARIWKPDIILVNNA 205
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 41.5 bits (93), Expect = 0.001
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
L+M W DK+L+WN +WG P ++ PD VL N A
Sbjct: 81 LEMQWYDKKLTWNPTDWGGVEYIHIPSDQIWIPDIVLYNNA 121
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 41.5 bits (93), Expect = 0.001
Identities = 18/70 (25%), Positives = 38/70 (54%)
Frame = +2
Query: 161 PPXSKIVVNLTLHLRHANIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRXR 340
PP +I + L++ ++ + E E L D + +W D RLSW+ ++G + + PR +
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYGGINHIYVPRSK 137
Query: 341 LXRPDXVLLN 370
+ P+ +++
Sbjct: 138 VWIPETTIVD 147
>U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated ion
channel protein 3 protein.
Length = 355
Score = 39.1 bits (87), Expect = 0.005
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 161 PPXSKIVVNLTLHLRHA-NIRESESSGRILADLQMNWIDKRLSWNAWEW-GCSHLAWCPR 334
PP ++ ++ + L H I E + ++L + W D LSW E+ G H W P
Sbjct: 86 PPDGRVDISHNIELVHIIGINELNQNMQVLVYIVQQWTDASLSWKVEEFRGIKH-TWLPE 144
Query: 335 XRLXRPDXVLLN 370
+ PD ++ N
Sbjct: 145 HSIWIPDIIVFN 156
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 38.3 bits (85), Expect = 0.008
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 161 PPXSKIVVNLTLHLRHA-NIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRX 337
PP + V L L H I E + + +L + +W+D L+W+ +G W P
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGITKTWIPLD 142
Query: 338 RLXRPDXVLLNPAANXR 388
++ PD ++ N + R
Sbjct: 143 KIWVPDIIVFNMVKSNR 159
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 38.3 bits (85), Expect = 0.008
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 161 PPXSKIVVNLTLHLRHA-NIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRX 337
PP + V L L H I E + + +L + +W+D L+W+ +G W P
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGITKTWIPLD 142
Query: 338 RLXRPDXVLLNPAAN 382
++ PD ++ N A+
Sbjct: 143 KIWVPDIIVFNMLAH 157
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 38.3 bits (85), Expect = 0.008
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 155 SLPPXSKIVVNLTLHLRHA-NIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCP 331
S P + + L L L ++ E + L+ WID++LSW+ +G ++ + P
Sbjct: 45 STSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWDPVNYGGVNVLYVP 104
Query: 332 RXRLXRPDXVLLNPA 376
+ PD VL N A
Sbjct: 105 YEMIWVPDIVLYNNA 119
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 38.3 bits (85), Expect = 0.008
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 155 SLPPXSKIVVNLTLHLRHA-NIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCP 331
S P + + L L L ++ E + L+ WID++LSW+ +G ++ + P
Sbjct: 45 STSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWDPVNYGGVNVLYVP 104
Query: 332 RXRLXRPDXVLLNPA 376
+ PD VL N A
Sbjct: 105 YEMIWVPDIVLYNNA 119
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 38.3 bits (85), Expect = 0.008
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 155 SLPPXSKIVVNLTLHLRHA-NIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCP 331
S P + + L L L ++ E + L+ WID++LSW+ +G ++ + P
Sbjct: 45 STSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWDPVNYGGVNVLYVP 104
Query: 332 RXRLXRPDXVLLNPA 376
+ PD VL N A
Sbjct: 105 YEMIWVPDIVLYNNA 119
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 38.3 bits (85), Expect = 0.008
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 161 PPXSKIVVNLTLHLRHA-NIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRX 337
PP + V L L H I E + + +L + +W+D L+W+ +G W P
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGITKTWIPLD 142
Query: 338 RLXRPDXVLLNPAANXR 388
++ PD ++ N + R
Sbjct: 143 KIWVPDIIVFNMVKSNR 159
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 38.3 bits (85), Expect = 0.008
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 161 PPXSKIVVNLTLHLRHA-NIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRX 337
PP + V L L H I E + + +L + +W+D L+W+ +G W P
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGITKTWIPLD 142
Query: 338 RLXRPDXVLLNPAAN 382
++ PD ++ N A+
Sbjct: 143 KIWVPDIIVFNMLAH 157
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 38.3 bits (85), Expect = 0.008
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 161 PPXSKIVVNLTLHLRHA-NIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRX 337
PP + V L L H I E + + +L + +W+D L+W+ +G W P
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGITKTWIPLD 142
Query: 338 RLXRPDXVLLNPAANXR 388
++ PD ++ N + R
Sbjct: 143 KIWVPDIIVFNMVKSNR 159
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 38.3 bits (85), Expect = 0.008
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 161 PPXSKIVVNLTLHLRHA-NIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRX 337
PP + V L L H I E + + +L + +W+D L+W+ +G W P
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGITKTWIPLD 142
Query: 338 RLXRPDXVLLNPAAN 382
++ PD ++ N A+
Sbjct: 143 KIWVPDIIVFNMLAH 157
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 36.7 bits (81), Expect = 0.026
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 161 PPXSKIVVNLTLHLRHANIRESESSGRILADLQMNWIDKRLSWNAWEW-GCSHLAWCPRX 337
PP +++ + + + L+ ++ E E L D W D+RL WN E+ G SH+ + P+
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWNPLEYGGISHI-YVPQR 108
Query: 338 RLXRPDXVL 364
+ P+ +
Sbjct: 109 MIWLPEVTI 117
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 35.9 bits (79), Expect = 0.045
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 212 NIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
++ E + + L +W+D RLSWN E+G L P L PD +L N A
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWNPDEFGNITLMHFPGEMLWLPDIILYNNA 98
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 34.7 bits (76), Expect = 0.10
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
LQ +W+D +L W+ E+G + + P + PD VL N A
Sbjct: 79 LQHSWMDYKLRWDPVEYGGVEVLYVPSDTIWLPDVVLYNNA 119
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 34.7 bits (76), Expect = 0.10
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
LQ +W+D +L W+ E+G + + P + PD VL N A
Sbjct: 79 LQHSWMDYKLRWDPVEYGGVEVLYVPSDTIWLPDVVLYNNA 119
>Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical
protein ZC504.2 protein.
Length = 537
Score = 34.3 bits (75), Expect = 0.14
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
L+M W D RL W+ WG P ++ PD +L N A
Sbjct: 77 LEMQWFDYRLMWDPGRWGKIRKLHVPVDQIWIPDILLYNNA 117
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 33.9 bits (74), Expect = 0.18
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
L M W D +L+WN E+G P R+ PD VL N A
Sbjct: 113 LTMKWNDFQLAWNPAEYGNISNLHVPSDRVWLPDIVLFNNA 153
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 33.9 bits (74), Expect = 0.18
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
L M W D +L+WN E+G P R+ PD VL N A
Sbjct: 113 LTMKWNDFQLAWNPAEYGNISNLHVPSDRVWLPDIVLFNNA 153
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 33.1 bits (72), Expect = 0.32
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = +2
Query: 197 HLRHANIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRP 352
+L+ ++E + ++ ++ W D RLSWNA W + + + + ++ P
Sbjct: 80 YLKLVEVQEPQEKISVVMEIMEYWYDARLSWNASAWQNTTMIYMKQDKVWSP 131
>AC024207-2|AAL77193.1| 425|Caenorhabditis elegans Hypothetical
protein Y74E4A.1a protein.
Length = 425
Score = 32.3 bits (70), Expect = 0.55
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPD 355
L+++W D+RL WN EW L RL PD
Sbjct: 107 LKLSWKDRRLRWNPEEWKTEVLRLKSMGRLWSPD 140
>AC024207-1|AAL77194.1| 428|Caenorhabditis elegans Hypothetical
protein Y74E4A.1b protein.
Length = 428
Score = 32.3 bits (70), Expect = 0.55
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPD 355
L+++W D+RL WN EW L RL PD
Sbjct: 107 LKLSWKDRRLRWNPEEWKTEVLRLKSMGRLWSPD 140
>Z68118-7|CAA92184.2| 573|Caenorhabditis elegans Hypothetical
protein R01E6.4 protein.
Length = 573
Score = 31.9 bits (69), Expect = 0.73
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPAA 379
L+M W D +L+W ++G P + PD VL N AA
Sbjct: 90 LEMKWNDAKLTWTPEKYGGLKTLHIPSDFIWTPDLVLYNNAA 131
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 31.9 bits (69), Expect = 0.73
Identities = 14/67 (20%), Positives = 33/67 (49%)
Frame = +2
Query: 179 VVNLTLHLRHANIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDX 358
+V++ H+ H +I + E + + + M W D+ L W+ ++ A + ++ +P
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWDPKDFNNIQYARVKKWQVWQPKI 133
Query: 359 VLLNPAA 379
+ N A+
Sbjct: 134 KVSNSAS 140
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 31.9 bits (69), Expect = 0.73
Identities = 14/67 (20%), Positives = 33/67 (49%)
Frame = +2
Query: 179 VVNLTLHLRHANIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDX 358
+V++ H+ H +I + E + + + M W D+ L W+ ++ A + ++ +P
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWDPKDFNNIQYARVKKWQVWQPKI 133
Query: 359 VLLNPAA 379
+ N A+
Sbjct: 134 KVSNSAS 140
>AF187013-1|AAG35183.1| 573|Caenorhabditis elegans nicotinic
acetylcholine receptor-like subunit ACR-12 protein.
Length = 573
Score = 31.9 bits (69), Expect = 0.73
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPAA 379
L+M W D +L+W ++G P + PD VL N AA
Sbjct: 90 LEMKWNDAKLTWTPEKYGGLKTLHIPSDFIWTPDLVLYNNAA 131
>Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical
protein F28F8.1 protein.
Length = 510
Score = 31.5 bits (68), Expect = 0.97
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 215 IRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
+ E + I L++ WID+ L+W+ ++G P ++ +PD ++ N A
Sbjct: 69 VDERDQIVNIYCWLELYWIDETLTWDPKKFGNLSRIHVPAHKIWKPDVLVYNNA 122
>AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine
receptor, one ofnine alpha a7-like nicotinic
acetylcholine receptor subunits(58.6 kD) (acr-18)
protein.
Length = 510
Score = 31.5 bits (68), Expect = 0.97
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 215 IRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
+ E + I L++ WID+ L+W+ ++G P ++ +PD ++ N A
Sbjct: 69 VDERDQIVNIYCWLELYWIDETLTWDPKKFGNLSRIHVPAHKIWKPDVLVYNNA 122
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 188 LTLHLRHANIRESESSGRILADLQMNWIDKRLSWNA 295
L +L+ ++E E ++ +L W D RLSWN+
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNS 114
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 197 HLRHANIRESESSGRILADLQMNWIDKRLSWNAWEW 304
+L+ + E E ++ +L W D RLSWNA ++
Sbjct: 81 NLKLIQVNEPEEQVSVVLELMEYWYDPRLSWNASDY 116
>AL110490-4|CAB54450.1| 474|Caenorhabditis elegans Hypothetical
protein Y48B6A.4 protein.
Length = 474
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 257 QMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
Q W D +L W+ E+G P L +PD +L N A
Sbjct: 78 QYTWNDYKLRWSPEEYGNITTLQIPHGTLWKPDILLFNSA 117
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +2
Query: 170 SKIVVNLTLHLRHANIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHL 319
+K+V ++ + + I E + ++ ++W D +SW+ +WG S L
Sbjct: 83 TKVVRVESVRINNVEIDERRQNVKVFGRFVLSWNDTMVSWDKEQWGLSWL 132
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 179 VVNLTLHLRHAN---IRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXR 349
V+N+T+ + N + E +IL +W D L+W+ EW P+ ++
Sbjct: 60 VLNVTVQPQIYNLVEVNEQNEQIKILLWFPQSWKDDYLTWDPKEWNGIERIIIPKSQIWI 119
Query: 350 PDXVLLN 370
PD + N
Sbjct: 120 PDGYIFN 126
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 179 VVNLTLHLRHAN---IRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXR 349
V+N+T+ + N + E +IL +W D L+W+ EW P+ ++
Sbjct: 60 VLNVTVQPQIYNLVEVNEQNEQIKILLWFPQSWKDDYLTWDPKEWNGIERIIIPKSQIWI 119
Query: 350 PDXVLLN 370
PD + N
Sbjct: 120 PDGYIFN 126
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLN 370
L+M+W D L+W+ E+G P + +PD +L N
Sbjct: 77 LRMSWTDHYLTWDPSEFGNIKEVRLPINNIWKPDVLLYN 115
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLN 370
L+M+W D L+W+ E+G P + +PD +L N
Sbjct: 77 LRMSWTDHYLTWDPSEFGNIKEVRLPINNIWKPDVLLYN 115
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Frame = +2
Query: 149 IGSLPPX----SKIVVNLT-LHLRHANIRESESSGRILADLQMNWIDKRLSWNAWEW 304
I S+PP + +N L+H + E I L+++W D RL WN W
Sbjct: 47 IASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWHDDRLMWNQDTW 103
>U00053-1|AAZ94293.1| 548|Caenorhabditis elegans Acetylcholine
receptor protein 5 protein.
Length = 548
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 182 VNLTLHLRHA-NIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDX 358
VNL++ L ++ E S + + +W D+ L WN ++G + P ++ PD
Sbjct: 133 VNLSMSLYQILDVDEHMQSIEVNVWMVQHWYDEFLDWNPVDYGMINRTIVPYHQIWIPDT 192
Query: 359 VLLN 370
L N
Sbjct: 193 YLYN 196
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 29.1 bits (62), Expect = 5.2
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 131 RSSQRTIGSLPPXSKIVVNLTLHLRHA-NIRESESSGRILADLQMNWIDKRLSWNAWEWG 307
R + T+ S P +VV+L + L+ N+ E E + A L+ W D+ L W +
Sbjct: 35 REERPTLDSSKP---VVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLRWEPTAYE 91
Query: 308 CSHLAWCPRXRLXRPDXVLLN 370
P L PD +L N
Sbjct: 92 NVTDLRHPPDALWTPDILLYN 112
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 188 LTLHLRHANIRESESSGRILADLQMNWIDKRLSWN 292
L +L+ ++E ++ +L W D RLSWN
Sbjct: 79 LLYYLKLVEVQEPAEKVSVVLELVERWYDPRLSWN 113
>U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform a protein.
Length = 446
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 185 NLTLHLRHANIRESESSGRILAD---LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPD 355
N+T+ L I++ + +I+ ++ W D+ L+WN ++G P + +PD
Sbjct: 51 NVTVQLYFKQIQKVHENDQIITLYCWIEEYWQDEFLTWNPSDFGNIKSLHVPSEMIWKPD 110
Query: 356 XVLLNPA 376
++ N A
Sbjct: 111 LLVYNNA 117
>U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform b protein.
Length = 515
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 185 NLTLHLRHANIRESESSGRILAD---LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPD 355
N+T+ L I++ + +I+ ++ W D+ L+WN ++G P + +PD
Sbjct: 51 NVTVQLYFKQIQKVHENDQIITLYCWIEEYWQDEFLTWNPSDFGNIKSLHVPSEMIWKPD 110
Query: 356 XVLLNPA 376
++ N A
Sbjct: 111 LLVYNNA 117
>AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine
receptor, nicotinic,alpha 9 like (58.1 kD) alternative
variant a protein.
Length = 499
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 185 NLTLHLRHANIRESESSGRILAD---LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPD 355
N+T+ L I++ + +I+ ++ W D+ L+WN ++G P + +PD
Sbjct: 35 NVTVQLYFKQIQKVHENDQIITLYCWIEEYWQDEFLTWNPSDFGNIKSLHVPSEMIWKPD 94
Query: 356 XVLLNPA 376
++ N A
Sbjct: 95 LLVYNNA 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,925,038
Number of Sequences: 27780
Number of extensions: 202034
Number of successful extensions: 503
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2605097262
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -