Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_P11
(996 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 35 0.001
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 34 0.002
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 34 0.002
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 33 0.003
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 33 0.003
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 32 0.009
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.016
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.016
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.016
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.016
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.016
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.016
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.016
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.016
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 31 0.016
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 29 0.049
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 29 0.086
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 25 1.1
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 24 2.5
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 4.3
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 23 5.7
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 34.7 bits (76), Expect = 0.001
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
++ +W D +L W+ E+G + P + RPD VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 34.3 bits (75), Expect = 0.002
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
++ W D +L WN E+G + + P + PD VL N A
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 33.9 bits (74), Expect = 0.002
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 266 WIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
W D L WNA E+ + P R+ RPD +L N A
Sbjct: 62 WTDHHLKWNASEFAGIRVIRVPYNRVWRPDTILYNNA 98
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 33.5 bits (73), Expect = 0.003
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
++ +W D +L W E+G + P + RPD VL N A
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 33.5 bits (73), Expect = 0.003
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
++ +W D +L W E+G + P + RPD VL N A
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 31.9 bits (69), Expect = 0.009
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 173 KIVVNLTL-HLRHANIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXR 349
K+ VN L ++ N+ E + L+ W D +L W+ ++G + P ++ +
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 350 PDXVLLNPA 376
PD VL N A
Sbjct: 111 PDIVLFNNA 119
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 31.1 bits (67), Expect = 0.016
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEW-GCSHLAWCPRXRLXRPDXVLLNPA 376
L++ W+D L WN E+ G L P +L +PD ++ N A
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPN-KLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 31.1 bits (67), Expect = 0.016
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEW-GCSHLAWCPRXRLXRPDXVLLNPA 376
L++ W+D L WN E+ G L P +L +PD ++ N A
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPN-KLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 31.1 bits (67), Expect = 0.016
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEW-GCSHLAWCPRXRLXRPDXVLLNPA 376
L++ W+D L WN E+ G L P +L +PD ++ N A
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPN-KLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 31.1 bits (67), Expect = 0.016
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEW-GCSHLAWCPRXRLXRPDXVLLNPA 376
L++ W+D L WN E+ G L P +L +PD ++ N A
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPN-KLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 31.1 bits (67), Expect = 0.016
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEW-GCSHLAWCPRXRLXRPDXVLLNPA 376
L++ W+D L WN E+ G L P +L +PD ++ N A
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPN-KLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 31.1 bits (67), Expect = 0.016
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEW-GCSHLAWCPRXRLXRPDXVLLNPA 376
L++ W+D L WN E+ G L P +L +PD ++ N A
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPN-KLWKPDILMYNSA 79
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 31.1 bits (67), Expect = 0.016
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEW-GCSHLAWCPRXRLXRPDXVLLNPA 376
L++ W+D L WN E+ G L P +L +PD ++ N A
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPN-KLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 31.1 bits (67), Expect = 0.016
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEW-GCSHLAWCPRXRLXRPDXVLLNPA 376
L++ W+D L WN E+ G L P +L +PD ++ N A
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPN-KLWKPDILMYNSA 147
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 31.1 bits (67), Expect = 0.016
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
L++ W D + WN ++G P RL +PD ++ N A
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSA 116
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 29.5 bits (63), Expect = 0.049
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
++ W D +L WN ++G P + PD VL N A
Sbjct: 73 VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 28.7 bits (61), Expect = 0.086
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLNPA 376
L+ W D + W+ E+G + P + PD VL N A
Sbjct: 73 LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNA 113
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 25.0 bits (52), Expect = 1.1
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 179 VVNLTLHLRH-ANIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPD 355
+V + L +R A I + + + + W+D+RL +N + +L R+ PD
Sbjct: 60 IVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFNDFGGRLKYLTLTDASRVWMPD 119
Query: 356 XVLLN 370
N
Sbjct: 120 LFFSN 124
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 23.8 bits (49), Expect = 2.5
Identities = 12/61 (19%), Positives = 26/61 (42%)
Frame = +2
Query: 182 VNLTLHLRHANIRESESSGRILADLQMNWIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXV 361
++ L ++H N+ E + L++ W L+W + E+ + + PD V
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
Query: 362 L 364
+
Sbjct: 122 M 122
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 23.0 bits (47), Expect = 4.3
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +2
Query: 284 SWNAWEWGCSHLAWCP 331
SW W SHL+W P
Sbjct: 93 SWMTLMWTDSHLSWKP 108
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.6 bits (46), Expect = 5.7
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 266 WIDKRLSWNAWEWGCSHLAWCPRXRLXRPDXVLLN 370
W+D+RL +N + +L R+ PD N
Sbjct: 90 WLDERLRFNDFGGRLKYLTLTDASRVWMPDLFFSN 124
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,665
Number of Sequences: 438
Number of extensions: 2418
Number of successful extensions: 23
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33016347
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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