Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_P09
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    29   1.2  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    28   2.0  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    27   2.7  
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    26   6.2  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   6.2  
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    26   6.2  
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    26   6.2  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   8.2  

>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
 Frame = +3

Query: 321 GPPAGCGHQRNRSLDSVLQ-RIPEDMTPTSPEDAPLRLTIEATVPRLALPPEVPTGSDDS 497
           GPP+G   Q N  ++S  + + P        ED  +  T     P+    PEVP   D+ 
Sbjct: 200 GPPSG---QPNGHIESDNESKSPSQKESNESEDIQIAETPSNVTPKKKPSPEVPKLPDNR 256

Query: 498 GIHTPPDDNEDERPPLPTAARSXESLDSG 584
            +     +N D    L ++  + E  D G
Sbjct: 257 ELTVKQVENYDSWEDLVSSIDTIERKDDG 285


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 419 CILRRSWCHVFWYPLEHRVQGPVPLMTASRWRPSCACHMLIKRILVMLNS 270
           C    + C  +W+  E  + GP  LM A RW          KR+ VM NS
Sbjct: 168 CACCSTSCPSYWWNSEEYL-GPAVLMQAYRWIIDSRDQATAKRLDVMQNS 216


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 253 LTIWSTKLWLLIRKSLDSKHRVGT*FNYHPQQQL 152
           +++WS   WLL+     S H+  T    HP ++L
Sbjct: 101 ISMWSKGSWLLVHTLKSSSHKGITGIAVHPSEKL 134


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 366 SVLQRIPEDMTPTSPEDAPLRLTIEATVPRLALPPEVPTGSDDSGIHTP 512
           ++L+ I     P  P D PLRL ++  V ++     VP G  ++G+  P
Sbjct: 225 TLLEAIDSIEPPARPTDKPLRLPLQ-DVYKIGGIGTVPVGRVETGVIKP 272


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 599 RETSRSPRYDSRTDNYSWHQR 661
           R+ SRSP  D RT N+ +H R
Sbjct: 261 RQYSRSPSPDFRTRNHQFHSR 281


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 366 SVLQRIPEDMTPTSPEDAPLRLTIEATVPRLALPPEVPTGSDDSGIHTP 512
           ++L+ I     P  P D PLRL ++  V ++     VP G  ++G+  P
Sbjct: 225 TLLEAIDSIEPPARPTDKPLRLPLQ-DVYKIGGIGTVPVGRVETGVIKP 272


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 366 SVLQRIPEDMTPTSPEDAPLRLTIEATVPRLALPPEVPTGSDDSGIHTP 512
           ++L+ I     P  P D PLRL ++  V ++     VP G  ++G+  P
Sbjct: 225 TLLEAIDSIEPPARPTDKPLRLPLQ-DVYKIGGIGTVPVGRVETGVIKP 272


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = +3

Query: 372 LQRIPED-MTPTSPEDAPLRLTIEATVPRLALPPEVPTGSDDSGIHTPPDDNEDERPPLP 548
           ++ +P +  TP SP +     +   T     LPP +  GSD   +  PPD   D    + 
Sbjct: 271 MKDVPNNPFTPFSPINPYYAKSWNHTASAPLLPPGLKNGSDYPYLSVPPDILNDSYLAMC 330

Query: 549 TAARSXESLDS 581
            A  S    +S
Sbjct: 331 EAVNSRLDAES 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,406,242
Number of Sequences: 5004
Number of extensions: 67455
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)