Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_P09
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0461 + 3492302-3492413,3492868-3492964,3493053-3493131,349... 33 0.30
08_02_1512 + 27627740-27629009,27629111-27629256,27629842-276301... 31 0.93
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 31 1.2
11_06_0610 - 25449085-25453284 30 2.8
10_08_0888 - 21317163-21317687,21318044-21318153,21318258-21318408 29 3.8
10_08_0115 + 14924463-14924939 29 3.8
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 29 3.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 6.6
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 6.6
08_02_0627 + 19449196-19449651,19449723-19449861,19450260-194503... 28 8.7
08_02_0614 - 19333231-19334091 28 8.7
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 28 8.7
03_02_0960 - 12739024-12739085,12739586-12739783,12739874-12739988 28 8.7
>07_01_0461 +
3492302-3492413,3492868-3492964,3493053-3493131,
3493484-3493794,3494219-3494231
Length = 203
Score = 33.1 bits (72), Expect = 0.30
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 348 RNRSLDSVLQRIPEDMTPTSPEDAPLRLTIEATVPRLALPP 470
RN L +L R P + TPT P AP + A+VP +PP
Sbjct: 111 RNNRLKHILPRPPPEPTPT-PAPAPAAVPPSASVPSTVVPP 150
>08_02_1512 +
27627740-27629009,27629111-27629256,27629842-27630101,
27630346-27630412,27630511-27630545,27630818-27631587,
27631633-27631793
Length = 902
Score = 31.5 bits (68), Expect = 0.93
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +3
Query: 483 GSDDSG--IHTPPDDNEDERPPLPTAA 557
GSD SG IH P DD++D PP P A
Sbjct: 130 GSDGSGGHIHFPSDDDDDAEPPPPRPA 156
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 384 PEDMTPTSPEDAPLRLTIEATVPRLALPPEVPTGSDDSGIHTPP-DDNEDERPPLP 548
P D TPTSP A L AT P A PP P +PP ++ + PLP
Sbjct: 51 PADTTPTSPPPASPPLP-SATPPLAASPPPPPPPPPPRNSPSPPKPPSQAAQSPLP 105
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +3
Query: 384 PEDMTPTSPEDAPLR-LTIEATVPRLALPPEVPTGSDDSGIHTPPDDNEDERPPLPTAAR 560
PE+ TP+ P+ +P + P + P E S +PP E+ PP P +
Sbjct: 763 PEEYTPSPPKSSPPEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSP 822
Query: 561 SXESLDSG 584
S S G
Sbjct: 823 SPPSGHEG 830
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 384 PEDMTPTSPED-APLRLTIEATVPRLALPPEVPTGSDDSGIHTPPDDNEDERPPLPTAAR 560
P + +P PE +P LT P ++ PPE + + + P E E PP PT
Sbjct: 869 PPEKSPPPPETKSPPTLT-----PEISPPPEGKSPPSHTPESSSPPSKESEPPPTPTPKS 923
Query: 561 SXES 572
S S
Sbjct: 924 SPPS 927
>10_08_0888 - 21317163-21317687,21318044-21318153,21318258-21318408
Length = 261
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 413 LRRSWCHVFWYPLEHRVQGPVPLMTASRWRPSCACHMLI 297
+RRSW ++ HR+QGP L S + H +I
Sbjct: 206 MRRSWGSIWRLDANHRLQGPFSLRMVSESGQTVIAHQVI 244
>10_08_0115 + 14924463-14924939
Length = 158
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/64 (34%), Positives = 25/64 (39%)
Frame = +3
Query: 324 PPAGCGHQRNRSLDSVLQRIPEDMTPTSPEDAPLRLTIEATVPRLALPPEVPTGSDDSGI 503
P H+R LD V D P +DA L L I +P A PP DD I
Sbjct: 50 PATASTHRREIVLDDV------DKRPHVDDDAALLLHIGVRLPATATPPPEDVAGDDM-I 102
Query: 504 HTPP 515
PP
Sbjct: 103 DAPP 106
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 403 LRRRMHLCDSLSKRRYQDWRCPRKCRQAQTTLVFTRRPMTTKTSDPRSRQRRG 561
LRR + C+ + Y+ RC ++C+ Q RR D R R RRG
Sbjct: 35 LRRCLQRCEQ-DRPPYERARCVQECKDQQQQQQERRREHGGHDDDRRDRDRRG 86
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Frame = +3
Query: 327 PAGCGHQRNRSLDSVLQRIPEDMTPTSPEDAPLRL-TIEATVPRLALPPEVPTGSDDSGI 503
P CG S D ++P ++ SP D L + A P PP P +
Sbjct: 504 PPPCGSLSILSTDE--NQLPPEVQHESPSDRKLPSPSPTAAAPPPPPPPPPPPSGNKPAF 561
Query: 504 HTPPDDNEDERPPLP 548
PP PPLP
Sbjct: 562 SPPPPPPPPPPPPLP 576
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 384 PEDMTPTSPEDAPLRLTIEATVPRLALPPEVPTGSDDSGIHTPPDDNEDERPPLP 548
P +P P+ + I+ +P LPP +P D G+ PP PP P
Sbjct: 1060 PSPPSPPPPQRENTSVGIQGGIP--PLPPPLPPTLGDYGVAPPPPSIGAGAPPPP 1112
>08_02_0627 +
19449196-19449651,19449723-19449861,19450260-19450381,
19450685-19450888,19450981-19451040,19451628-19451820,
19451880-19451998,19452189-19452413,19452534-19452728
Length = 570
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 478 GTSGGSANLGTVASIVSRRGASSGEVGVM 392
G GG A GT+A+IV+ G VG++
Sbjct: 77 GGGGGGAGPGTIAAIVTSLGGGPAAVGIV 105
>08_02_0614 - 19333231-19334091
Length = 286
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -2
Query: 552 LSGAGVARLRCHRAACEYQSRLSLSALPGAAP 457
L GAG AR C A C++ + P P
Sbjct: 47 LGGAGCARYECEEAGCDFDLHAPCALAPDVLP 78
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Frame = +3
Query: 315 AGGPPAGCG--HQRNRSLDSVLQRIPEDMTPTSPEDAPLRLTIEATVPRLALPPEVPTGS 488
A P G H R S+ R P P P + A P + +PP+ P S
Sbjct: 354 ASSPTLGSSPVHLRPPSIPQPRGRAPNPSPPKRRPQPPEPMAAHAWNPFVPMPPQAPP-S 412
Query: 489 DDSGIHTPPDDNEDERPPL 545
++ H+P + + + PL
Sbjct: 413 EEEEEHSPSEKSMRKSRPL 431
>03_02_0960 - 12739024-12739085,12739586-12739783,12739874-12739988
Length = 124
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +3
Query: 363 DSVLQRIPEDMTPTSPEDAPLRLTIEATVPRLALPPEVPTGSDDSGIHTPPDDNEDERPP 542
D+ + +P TP E+AP+++T + R A P P S TPP PP
Sbjct: 43 DAAMVAVPPT-TPAGAEEAPVKVTRSIMIKRPAGYPASPR----SAASTPPASPAGSTPP 97
Query: 543 L 545
+
Sbjct: 98 I 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,306,143
Number of Sequences: 37544
Number of extensions: 529689
Number of successful extensions: 1929
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1921
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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