Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_P06
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    34   0.023
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.38 
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    27   2.7  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   3.5  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   3.5  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    26   8.1  

>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +2

Query: 251 ELWDQYDNLAAHTHKGIEFLDKYGNFVKERCAIELEYAGKLRRLVKNYQPKRKEE 415
           EL D +  + +  + G ++L+    + KER +IE EYA KL  L   Y  K+  +
Sbjct: 11  ELHDDFKVVDSWINNGAKWLEDIQLYYKERSSIEKEYAQKLASLSNKYGEKKSRK 65


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 410 EEDEYQYTACKAFKQLLQELGDFAGQREVVAEN--LQSNVVRELHLLAKELREERKQH 577
           E D Y Y    A  + L+  G F      V E   L ++++ + H L +ELR+E+ QH
Sbjct: 385 ERDLYPYQMKLASLENLRVNGKFLASDHSVPEGQELVNSLLTQCHQLIEELRDEKHQH 442


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 22/81 (27%), Positives = 29/81 (35%)
 Frame = +2

Query: 311 DKYGNFVKERCAIELEYAGKLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQR 490
           DKY      R    L       +L + + P R +   +Q    K    L Q L DF G  
Sbjct: 230 DKYSILSAARLRSRLRMGLSSEQLSEMF-PNRMDFSRFQIERLKERNDLTQRLMDFTGMN 288

Query: 491 EVVAENLQSNVVRELHLLAKE 553
           E     + S   RE  L+  E
Sbjct: 289 EFGPSRVVSEKNREYILVKNE 309


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 576 CCFLSSRNSLASRCNSRTTFD*RFSATTSRCPAKSPNSCSNCLNALH 436
           CC  SSR++  SR N  T          +R     P  CS+ +NA H
Sbjct: 448 CCLASSRSTSISRKNRYTDI---VPYDKTRVRLAVPKGCSDYINASH 491


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
 Frame = +2

Query: 335  ERCAIELEYAGKLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELG---DFAGQRE--VV 499
            E+ A+EL+Y+     L+       + E+E    + K F++     G   D    +E  V+
Sbjct: 706  EKQALELKYSSLKNELINAQNLLDRREEELSELSKKLFEERKIRSGSNDDIEKNKEINVL 765

Query: 500  AENLQSNVVRELHLLAKELR-EERKQHLNXGAKQMGVQNTSI 622
               L   + +  HL + ++  ++   HLN G ++  ++  ++
Sbjct: 766  NSELADKLAQIRHLESDKMELDKLVHHLNRGIEEANIEENAV 807


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 422 YQYTACKAFKQLLQELGDFAGQREVVAENLQSNVVREL 535
           Y  +  +AFK ++   G ++G   V  ENL+ ++V  L
Sbjct: 116 YHPSPFQAFKHIIDNGGKYSGLDRVFLENLRKSLVVSL 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,963
Number of Sequences: 5004
Number of extensions: 61166
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)