Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_P06
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     26   0.40 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   8.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.5  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 664 RRTLVRSAWXVPGTYRSVLNSHLF 593
           R+  +R+ W + GT   ++N HLF
Sbjct: 159 RKGFLRTRWSISGTVFDLINIHLF 182


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/45 (17%), Positives = 27/45 (60%)
 Frame = -2

Query: 223  KITSHTPKNTLKLH*HTIVVNTKNYRTNSTNNIFLITTTISKHIP 89
            ++++     T++L  H+++ + ++   +S +N+  +TT ++  +P
Sbjct: 924  QVSTSAGLQTIRLSGHSVLHSAQSVVASSASNVTNVTTNLTTILP 968


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 256 KLNTPTHLSGSKITSHTPKNTLKLH*HTIVVNTK 155
           K+N     SG+KI+  T K+ +K +  T V N+K
Sbjct: 544 KMNETYINSGNKISLATSKSFIKANSQTEVSNSK 577


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 283 PYAQRNRVFR*IWKLCQGEVRY 348
           P A  ++    IWK C+G++ Y
Sbjct: 188 PLAHYDQTAIEIWKQCEGKIDY 209


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 128 IICGICSVIFCVYHYCVS 181
           I+CGI  +   +Y+Y  S
Sbjct: 7   ILCGIAVLFLALYYYLTS 24


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 97  HIPQE*TWLTDVTFHS 50
           H+P E  WL D+  ++
Sbjct: 96  HVPSEHIWLPDIVLYN 111


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 428 YTACKAFKQLLQELGDFAGQREV--VAENLQSNVVRELHLL 544
           +++ K  +    ELG    ++ +  + E LQ NV+++ HLL
Sbjct: 124 FSSLKDHQHQFAELGRKKLEQAIQQLQEQLQLNVIQQTHLL 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,541
Number of Sequences: 438
Number of extensions: 4455
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)