Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_P05
         (969 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y00762-1|CAA68731.1|  457|Homo sapiens protein ( Human mRNA for ...    32   3.6  
X02502-1|CAA26344.1|  457|Homo sapiens acetylcholine receptor pr...    32   3.6  
S77094-1|AAD14247.1|  457|Homo sapiens nicotinic acetylcholine r...    32   3.6  
BC006314-1|AAH06314.1|  269|Homo sapiens CHRNA1 protein protein.       32   3.6  
AC018890-1|AAY14687.1|  457|Homo sapiens unknown protein.              32   3.6  

>Y00762-1|CAA68731.1|  457|Homo sapiens protein ( Human mRNA for
           muscle acetylcholine receptor alpha-subunit. ).
          Length = 457

 Score = 31.9 bits (69), Expect = 3.6
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = +1

Query: 73  PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPP--DSKIVVNLTLHLRHA---NIX 237
           P LL  ++ SA     +   + ++  L   Y     P  D + VV +T+ L+     N+ 
Sbjct: 5   PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64

Query: 238 ESESTVRILADLQMNWIDXRLSXNPXEWG 324
           E    V     L+  W+D  L  NP ++G
Sbjct: 65  EVNQIVTTNVRLKQQWVDYNLKWNPDDYG 93


>X02502-1|CAA26344.1|  457|Homo sapiens acetylcholine receptor
           protein.
          Length = 457

 Score = 31.9 bits (69), Expect = 3.6
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = +1

Query: 73  PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPP--DSKIVVNLTLHLRHA---NIX 237
           P LL  ++ SA     +   + ++  L   Y     P  D + VV +T+ L+     N+ 
Sbjct: 5   PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64

Query: 238 ESESTVRILADLQMNWIDXRLSXNPXEWG 324
           E    V     L+  W+D  L  NP ++G
Sbjct: 65  EVNQIVTTNVRLKQQWVDYNLKWNPDDYG 93


>S77094-1|AAD14247.1|  457|Homo sapiens nicotinic acetylcholine
           receptor alpha subunit|AChR protein.
          Length = 457

 Score = 31.9 bits (69), Expect = 3.6
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = +1

Query: 73  PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPP--DSKIVVNLTLHLRHA---NIX 237
           P LL  ++ SA     +   + ++  L   Y     P  D + VV +T+ L+     N+ 
Sbjct: 5   PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64

Query: 238 ESESTVRILADLQMNWIDXRLSXNPXEWG 324
           E    V     L+  W+D  L  NP ++G
Sbjct: 65  EVNQIVTTNVRLKQQWVDYNLKWNPDDYG 93


>BC006314-1|AAH06314.1|  269|Homo sapiens CHRNA1 protein protein.
          Length = 269

 Score = 31.9 bits (69), Expect = 3.6
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = +1

Query: 73  PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPP--DSKIVVNLTLHLRHA---NIX 237
           P LL  ++ SA     +   + ++  L   Y     P  D + VV +T+ L+     N+ 
Sbjct: 5   PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64

Query: 238 ESESTVRILADLQMNWIDXRLSXNPXEWG 324
           E    V     L+  W+D  L  NP ++G
Sbjct: 65  EVNQIVTTNVRLKQQWVDYNLKWNPDDYG 93


>AC018890-1|AAY14687.1|  457|Homo sapiens unknown protein.
          Length = 457

 Score = 31.9 bits (69), Expect = 3.6
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = +1

Query: 73  PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPP--DSKIVVNLTLHLRHA---NIX 237
           P LL  ++ SA     +   + ++  L   Y     P  D + VV +T+ L+     N+ 
Sbjct: 5   PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64

Query: 238 ESESTVRILADLQMNWIDXRLSXNPXEWG 324
           E    V     L+  W+D  L  NP ++G
Sbjct: 65  EVNQIVTTNVRLKQQWVDYNLKWNPDDYG 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,092,444
Number of Sequences: 237096
Number of extensions: 1457526
Number of successful extensions: 1997
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1997
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12880737904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)