Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_P01
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   159   5e-40
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   159   5e-40
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   7.6  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  159 bits (386), Expect = 5e-40
 Identities = 73/118 (61%), Positives = 82/118 (69%)
 Frame = +1

Query: 208 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 387
           DLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGN
Sbjct: 35  DLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGN 94

Query: 388 MCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPL 561
           MCR GRMFAPTK WR+WH                          ARGH IE+IPE+PL
Sbjct: 95  MCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPL 152



 Score =  104 bits (249), Expect = 2e-23
 Identities = 44/82 (53%), Positives = 62/82 (75%)
 Frame = +2

Query: 536 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYRSQRLRAGKGKMRNRRRIQ 715
           ++  P  P VV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +Q
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQ 203

Query: 716 RKGXLIIFNKDQGLTRAFRNIP 781
           R+G L++FN+D G+ +AFRNIP
Sbjct: 204 RRGPLVVFNEDTGIVKAFRNIP 225


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  159 bits (386), Expect = 5e-40
 Identities = 73/118 (61%), Positives = 82/118 (69%)
 Frame = +1

Query: 208 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 387
           DLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGN
Sbjct: 35  DLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGN 94

Query: 388 MCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPL 561
           MCR GRMFAPTK WR+WH                          ARGH IE+IPE+PL
Sbjct: 95  MCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPL 152



 Score =  103 bits (248), Expect = 2e-23
 Identities = 44/82 (53%), Positives = 62/82 (75%)
 Frame = +2

Query: 536 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYRSQRLRAGKGKMRNRRRIQ 715
           ++  P  P VV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +Q
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQ 203

Query: 716 RKGXLIIFNKDQGLTRAFRNIP 781
           R+G L++FN+D G+ +AFRNIP
Sbjct: 204 RRGPLVVFNEDAGIVKAFRNIP 225


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 118 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 41
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,572
Number of Sequences: 5004
Number of extensions: 60428
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)