Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_O24
         (869 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    30   0.032
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    28   0.13 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   1.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.8  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   6.4  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    22   6.4  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   8.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.5  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 29.9 bits (64), Expect = 0.032
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 671 IPCAQEGQLPWALPLDASMTFRPAYKISPXPGPHLFSG 784
           +P  +E  L W +P + S   RP ++  P PG H   G
Sbjct: 22  VPSMREKFLGWNVPPEYSDLVRPHWRAFPAPGKHFHIG 59


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 671 IPCAQEGQLPWALPLDASMTFRPAYKISPXPGPHLFSG 784
           +P  +E  L W +P + S    P ++  P PG H   G
Sbjct: 22  VPSMREKFLGWNVPPEYSDLVHPHWRAFPAPGKHFHIG 59


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 251 PDSLVLIIRDFLSNRSSRYRVEGTRSSPRPLTAGVPQGSVLTPLL 385
           PD  VL +   LS   +   V+ T +SP  +  G+  G+VL  +L
Sbjct: 335 PDHAVLCVYMGLSMVEAIKYVQQTTNSPVDMRVGIHTGAVLAGVL 379


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -3

Query: 747 LYAGRNVIDASRGNAQGN*PSWAQGIGLXKESNPGV--*DXXXXSGRKSVWSFPSELS 580
           L+AG N I  +   A G  P W     + +  N  +   +    +    ++SFP+ LS
Sbjct: 569 LHAGENTIIRNSQQAPGQSPDWPSTSQIQRGVNAAIRSQEPFYITEPHQIFSFPARLS 626


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 199 PHPPLRRLHRQSPWPGRN 146
           PHP LRR  +    PG N
Sbjct: 251 PHPRLRREAKPEAKPGNN 268


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 199 PHPPLRRLHRQSPWPGRN 146
           PHP LRR  +    PG N
Sbjct: 139 PHPRLRREAKPEAEPGNN 156


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 199 PHPPLRRLHRQSPWPGRN 146
           PHP LRR       PG N
Sbjct: 84  PHPRLRREAESEAEPGNN 101


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 622 LXGRISHPRITLFXQPNTLRPGRSITL 702
           L GR   P+I       TL+PG S+ L
Sbjct: 387 LGGRFEPPQIRQAFAEETLQPGPSMFL 413


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 133 ICKFSYGLATGIGGANDEAVDEATIRAAP 219
           +C+ S G+ +GIG      V+ +   AAP
Sbjct: 785 LCQASNGIGSGIGKVVQLKVNSSPYFAAP 813


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 133 ICKFSYGLATGIGGANDEAVDEATIRAAP 219
           +C+ S G+ +GIG      V+ +   AAP
Sbjct: 781 LCQASNGIGSGIGKVVQLKVNSSPYFAAP 809


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,583
Number of Sequences: 438
Number of extensions: 6428
Number of successful extensions: 27
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)