Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_O22
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.0  
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    22   8.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 414 GRYLFKIAGREPTAQCHHCADRDXGRHSGKH 506
           GR L +  G   T  C  C D+  G H G H
Sbjct: 54  GRVLAEFDGT--TVLCRVCGDKASGFHYGVH 82


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 13  VPSAWGRSHTWHCRQP 60
           +PS  G    W CRQP
Sbjct: 477 MPSIRGAIQQWTCRQP 492


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/44 (22%), Positives = 18/44 (40%)
 Frame = -1

Query: 151 HRDNRRQSYNYEQGNQRHYQQTQKEAWVALTAAYNAKCGSFPKQ 20
           HR +  +    ++  Q H + T+K       AA+N     +  Q
Sbjct: 600 HRSSSTKGITIQEPPQWHTRSTEKRVSAGTPAAFNISTTIYENQ 643


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -3

Query: 425  KVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQ 264
            +VPA+ T  G H+ +P   ++ +A + V +   +   G   G ++R  +   +Q
Sbjct: 1311 RVPARITSFGGHVVRPWRGSATLACNAVGDPTREWYKG--QGEQIRTDSTRNIQ 1362


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 450 TAQCHHCADRDXGRHSGKH 506
           T  C  C D+  G H G H
Sbjct: 6   TVLCRVCGDKASGFHYGVH 24


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -3

Query: 425  KVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQ 264
            +VPA+ T  G H+ +P   ++ +A + V +   +   G   G ++R  +   +Q
Sbjct: 1307 RVPARITSFGGHVVRPWRGSATLACNAVGDPTREWYKG--QGEQIRTDSTRNIQ 1358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,381
Number of Sequences: 438
Number of extensions: 3562
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)