Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_O06
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.3  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 172  LLGVQQDNVYPQAYIRSEIRTLLSLA 249
            L+ VQ +N YP+  +  E+R  L  A
Sbjct: 1160 LIIVQAENAYPEVELDRELRPYLRTA 1185


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 677 LESTQFNTNNTTRSMTSGSSKQATRNKQXSGGXKN 781
           LE+ Q N+NN+T  +T+G++     N   +    N
Sbjct: 216 LETCQRNSNNST--ITAGNANTNASNNNNNNNNNN 248


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 445 DCRLHHMAFTNGNTTRNK 498
           DC L  + F N +TT N+
Sbjct: 64  DCMLKKVGFVNADTTFNE 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,735
Number of Sequences: 438
Number of extensions: 3930
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)